Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46850 670 / 0 Protein kinase superfamily protein (.1) AT2G23450 234 / 9e-68 Protein kinase superfamily protein (.1.2) AT5G66790 177 / 1e-47 Protein kinase superfamily protein (.1) AT1G21230 172 / 3e-45 WAK5 wall associated kinase 5 (.1) AT1G21210 171 / 4e-45 WAK4 wall associated kinase 4 (.1) AT5G02070 168 / 3e-44 Protein kinase family protein (.1) AT1G69730 165 / 7e-43 Wall-associated kinase family protein (.1) AT1G21240 163 / 2e-42 WAK3 wall associated kinase 3 (.1) AT1G21250 159 / 5e-41 PRO25, WAK1 cell wall-associated kinase (.1) AT4G31110 159 / 8e-41 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130900 [exp] 225 / 3e-64 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 217 / 2e-61 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 214 / 2e-60 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G118500 [exp] 198 / 6e-55 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.002G130600 [exp] 194 / 2e-53 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G192100 [exp] 189 / 2e-51 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 186 / 3e-50 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G192500 [exp] 185 / 7e-50 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.004G192900 [exp] 181 / 1e-48 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005138 [exp] 747 / 0 AT2G46850 607 / 0.0 Protein kinase superfamily protein (.1) Lus10030181 [exp] 521 / 0 AT2G46850 429 / 2e-145 Protein kinase superfamily protein (.1) Lus10032741 [exp] 211 / 6e-59 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 191 / 7e-52 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 179 / 2e-48 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10030180 [exp] 158 / 9e-46 AT2G46850 134 / 6e-38 Protein kinase superfamily protein (.1) Lus10019657 [exp] 168 / 3e-44 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008105 [exp] 159 / 6e-41 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 155 / 6e-40 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10034085 [exp] 149 / 2e-37 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.002G181100.1 pacid=42779353 polypeptide=Potri.002G181100.1.p locus=Potri.002G181100 ID=Potri.002G181100.1.v4.1 annot-version=v4.1 ATGTTAGCTCTACTCCTTGCACCTTTGTTTCTCTTCACATTGCTCCATCAATCGCCCATTTCTCATTGTCTTCAAGAAACACAGCAGCATCCTCAGAAAT TAATTAGCCAGTGTGATGAGAAATGCGGGAAGTTGCGTATCCCATTTCCATTTCACCTGAACACTTCTTGTGCTTCAGTTTCCAACGCTTTTCATCTTTC TTGCTCAAACTCCACTACCCTTTACCTCAACATAGACTCTCTAAGCTATAAAGTCCTTGAATTCTTCTCCGATGGTATATTAGTAGACTTTTCGGGTAGC TCCACTTGTCGACAGTACAATGATTTGAATTCCTTTGGTTTGGCAGGAAATGACTGCTTTGGCCTATCGGTTGATAATGTTATTGGTTTATATGATTGTG AGGACTCTTCTTTGTGTAAAGCAGACTGTGAAACGATTGACTTGCCTGGTTGTGATGGCAGTGGCAGCGGCCCTCCTGCCTGCTGTTATCCCCTTTCCGA TCATAGTTCATGGGATTTTGGAGATGGCTTCTCAGTGTTTTCCAAATTTGGATGCCGGGGGTTCTCTTCTTGGGTTGTTTCTCGCGGTACCAACACTGGA AAGCGCGGGGTTAAGTTAGAATGGGCGGTTCCAAAGAATTCATCCAAGGGAGTCTGTGCTGACAAAGCAGACATTGTAAATGCTACAGCAGTTGATGGAG GGATACGGTGCAAATGTCAGGATGGATTCGTTGGTGATGGATATGCTAGTGGAGAAGGATGCATGAAATCCAGCATCAAGGATGGAGAGGAAGCACGCGG CAGTGATCGTGATACAAAAAAGCACAGGGGAAAAATGGTTACAATTTTAGCTGGAGTTGTTGGTCCGATATTCATCATTGCCTCCCTGATTGCACTCTTT TGCCTACTGAAACGACCTGTTAAGGCTGACATGTACGACCCTGACCATGCTCATCTACACAGCACCATCTCATTCAGGAAAGCTTGTAGGACTAGATTAT TCAATTACCATGAGCTAGAAAATGCTACCAGAGGATTTGATGGTGATCAAAAACTTGCAAGCAGCAATAACAGTACAATTTATGCAGGGGTCCTTGGAGA TGATACACATATAGCTGTGCACAAGGTAGAATGCCGTGACGAAAGAGAACTCACTCAGGTCCTGTCTAGGGTTGAGGTTTTATCTGCAGTTTTACATAGG AATATGGCTCGTGTCCTTGGATGCTGCATTAACTCTGTCTACTCTCCACTAGTAGTCTATGAGTATCCTGCTAATGGTACCTTGGAGGAACATTTGCACC AGAGTGGAGAACAAAAGGTTGGCCTTGATTGGTATAAGAGATTGAGAATTTCCGCAGAAACAGCAAGTGTTCTTGCATTCTTGCAGTATGAAATCATCCC TCCTATCTTCCACCATGATCTCAAATCCGGCAACATCTTTTTAGATGAAGATTTATCAGTTAAAGTCGCTGGGTTCAAGCTATTTACAGCTAGCCTTGGG AATGATACTCATTCATACAGCAATCATGAAGGATCACGTATTCACCAGAGTGATGTTTACAACTTTGGCGTATTGCTTCTAGAGTTAATTACAGGCTCCA AAAACAAGGAGCTCCCAGCTGTAGCATTGAAAAAAATTAGAAGTGGGAAGCTAGAAGAAATCGTGGATCCGGGTCTCCATTATCACGAGCAACCGCCATT TCGCCGGGATCAGATAGAGGTAATTGCCGACCTTGCCACAAGATGCCTGTTGTTTGGTGGAGATGGTAAGATTGGAATGGTTGAGGTTGCAAGGGAACTG ATACACATTGCAAAAGAGAGCATTGATGGATGTAGTAAACGGGGACGTGGACTTGAAGAGACCTTTTCAAATTCCAGCCTCCTTCAAATGATATCCATGT CTCCTGACTCTATATATGTTCCTTGA
AA sequence Show only first row Show all	>Potri.002G181100.1 pacid=42779353 polypeptide=Potri.002G181100.1.p locus=Potri.002G181100 ID=Potri.002G181100.1.v4.1 annot-version=v4.1 MLALLLAPLFLFTLLHQSPISHCLQETQQHPQKLISQCDEKCGKLRIPFPFHLNTSCASVSNAFHLSCSNSTTLYLNIDSLSYKVLEFFSDGILVDFSGS STCRQYNDLNSFGLAGNDCFGLSVDNVIGLYDCEDSSLCKADCETIDLPGCDGSGSGPPACCYPLSDHSSWDFGDGFSVFSKFGCRGFSSWVVSRGTNTG KRGVKLEWAVPKNSSKGVCADKADIVNATAVDGGIRCKCQDGFVGDGYASGEGCMKSSIKDGEEARGSDRDTKKHRGKMVTILAGVVGPIFIIASLIALF CLLKRPVKADMYDPDHAHLHSTISFRKACRTRLFNYHELENATRGFDGDQKLASSNNSTIYAGVLGDDTHIAVHKVECRDERELTQVLSRVEVLSAVLHR NMARVLGCCINSVYSPLVVYEYPANGTLEEHLHQSGEQKVGLDWYKRLRISAETASVLAFLQYEIIPPIFHHDLKSGNIFLDEDLSVKVAGFKLFTASLG NDTHSYSNHEGSRIHQSDVYNFGVLLLELITGSKNKELPAVALKKIRSGKLEEIVDPGLHYHEQPPFRRDQIEVIADLATRCLLFGGDGKIGMVEVAREL IHIAKESIDGCSKRGRGLEETFSNSSLLQMISMSPDSIYVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46850			Protein kinase superfamily pro...		Potri.002G181100 [exp]	0	1
AT1G11925			Stigma-specific Stig1 family p...		Potri.008G220900 [exp]	2.00	0.9490
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041600 [exp]	7.14	0.9265	HNL.5
AT1G34110			Leucine-rich receptor-like pro...		Potri.002G063300 [exp]	9.00	0.9107
AT2G05910			Protein of unknown function (D...		Potri.006G140900 [exp]	16.49	0.8942
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	17.29	0.9081
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	19.62	0.9150
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	22.13	0.9201
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	22.71	0.8870
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.008G048300 [exp]	22.91	0.9076
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	23.62	0.9160

Compare expression of checked genes

Potri.002G181100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.