Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 399 / 7e-144 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 389 / 1e-139 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 382 / 9e-137 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 357 / 4e-127 ATPPA4 pyrophosphorylase 4 (.1) AT2G18230 323 / 1e-113 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 80 / 1e-17 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107100 [exp] 432 / 1e-156 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 359 / 1e-127 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.007G022700 [exp] 353 / 1e-125 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.009G081200 [exp] 80 / 9e-18 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 77 / 8e-17 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005139 [exp] 387 / 5e-139 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 387 / 7e-139 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10024422 [exp] 364 / 1e-129 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 365 / 3e-128 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10041767 [exp] 360 / 5e-128 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10028320 [exp] 360 / 5e-128 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 355 / 4e-126 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 354 / 6e-126 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10037239 [exp] 80 / 9e-18 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 80 / 1e-17 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [poplar] [flax] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.002G181300.1 pacid=42778210 polypeptide=Potri.002G181300.1.p locus=Potri.002G181300 ID=Potri.002G181300.1.v4.1 annot-version=v4.1 ATGAGTGACGTAACAAAAACACAAGAAAATGAAGTTGAAACTAAGCACCAAGCGCCCCGTCTGAATGAGAGAATCCTTTCATCTTTGTCAAGGAGAACTG TTGCTGCACATCCTTGGCATGATCTTGAAATTGGGCCTGGAGCTCCCCACATTTTCAATGTCGTGGTTGAGATAACAAAAGGAAGTAAGGTCAAATATGA ACTGGACAAGAAGACAGGACTAATCAAGGTTGATCGGATTTTATACTCCTCAGTGGTCTATCCCCACAACTATGGTTTCATCCCTCGCACATTATGCGAA GACAATGATCCCTTGGATGTTTTAGTACTCATGCAGGAGCCTGTCCTTCCCGGTTGTTTTCTACGAGCCAGGGCCATTGGACTTATGCCCATGATTGACC AGGGAGAGAAAGACGACAAAATTATTGCAGTTTGTGCTGATGATCCTGAGTACAAGCACTACACTGACATCAAGGAGCTGGCCCCCCATCGTCTTTCTGA GATCCGACGTTTCTTTGAAGACTACAAGAAAAATGAGAACAAGGAGGTTGCAGTTAATGACTTCTTACCTTCAAATACTGCTGTTGAAGCTATCCAGTAC TCAATGGACCTTTATGCTGAGTACGTTTTGCACACCCTGCGTCGGTAG
AA sequence Show only first row Show all	>Potri.002G181300.1 pacid=42778210 polypeptide=Potri.002G181300.1.p locus=Potri.002G181300 ID=Potri.002G181300.1.v4.1 annot-version=v4.1 MSDVTKTQENEVETKHQAPRLNERILSSLSRRTVAAHPWHDLEIGPGAPHIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCE DNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIKELAPHRLSEIRRFFEDYKKNENKEVAVNDFLPSNTAVEAIQY SMDLYAEYVLHTLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	0	1
AT1G16520			unknown protein		Potri.005G097600 [exp]	1.73	0.9423
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	1.73	0.9473	GAPDH1.4
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Potri.001G271100 [exp]	2.00	0.9401
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.019G092500 [exp]	3.46	0.9466	RAB11.11
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.011G091100 [exp]	6.78	0.9283
AT3G45230			hydroxyproline-rich glycoprote...		Potri.004G210300 [exp]	7.48	0.9324
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	7.74	0.9333	RPT4.1
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.003G072500 [exp]	8.83	0.9244	PAE1.2
AT4G00585			unknown protein		Potri.002G155800 [exp]	8.94	0.9297
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	8.94	0.9397

Compare expression of checked genes

Potri.002G181300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.