Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01020 85 / 9e-21 ARV1 Arv1-like protein (.1.2) AT4G01510 74 / 3e-16 ARV2 Arv1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107300 [exp] 140 / 5e-42 AT1G01020 228 / 3e-75 Arv1-like protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007219 [exp] 142 / 3e-43 AT1G01020 139 / 2e-41 Arv1-like protein (.1.2) Lus10010099 [exp] 103 / 3e-27 AT1G01020 205 / 2e-66 Arv1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04161 [poplar] [flax] Arv1 Arv1-like family
Representative CDS sequence Show only first row Show all	>Potri.002G181700.2 pacid=42780010 polypeptide=Potri.002G181700.2.p locus=Potri.002G181700 ID=Potri.002G181700.2.v4.1 annot-version=v4.1 ATGGAGCATAGATGTGTAGAGTGTGGATTCCCGATAGAAACTCTTTTCGTCCAATACTCACCAGGCAACATTCGACTCATGAGATGTGCGAATTGCGAAG CAGTTGCAGACGAGTACATCGAATGTGAATTCATGATACTCGTGGATGTCTTTGTTGGAAACTTTATGTTTATCTGTGTTTTTCTTCTTTCAATGAGGCT GTTGCTAAACACATCGATTCAAATCTCCAGGTGCAGAGACATTTTGCTTGCAGTCCTAGTTTCAAGTCACTTCAAGATTTTTCTTATTGCCACAATGGTT TGGGAATTTCCGTTTTCTGTAATTTTCATCATTGATTTATTTGTTTTATCATCCAACACAGTGGCATTAAAAGCTCTTAATACTGAAGTTCCCAAATATT TCGTTGAATATTGCCCGCTTTCCTGCTTTTGTGAAGTACATTTATCATGTGGATTTGTTCTGTCAAATGTTAGAACATTGCTAGTTGATTTTTCTTTTCT TTTCTTTTCTTTTTTTCCTTTCTTTTTTTTTAGTAGATTCTTGGTGGATTATTGA
AA sequence Show only first row Show all	>Potri.002G181700.2 pacid=42780010 polypeptide=Potri.002G181700.2.p locus=Potri.002G181700 ID=Potri.002G181700.2.v4.1 annot-version=v4.1 MEHRCVECGFPIETLFVQYSPGNIRLMRCANCEAVADEYIECEFMILVDVFVGNFMFICVFLLSMRLLLNTSIQISRCRDILLAVLVSSHFKIFLIATMV WEFPFSVIFIIDLFVLSSNTVALKALNTEVPKYFVEYCPLSCFCEVHLSCGFVLSNVRTLLVDFSFLFFSFFPFFFFSRFLVDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	0	1
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	1.00	0.8688
					Potri.001G014050 [exp]	3.16	0.7688
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.017G111800 [exp]	6.00	0.7615
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	6.32	0.7870
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	6.70	0.7804
					Potri.014G044850 [exp]	7.14	0.6931
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	7.74	0.7465
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	10.00	0.7269
AT4G26310			elongation factor P (EF-P) fam...		Potri.001G004300 [exp]	14.07	0.7506
AT3G48900			single-stranded DNA endonuclea...		Potri.015G142800 [exp]	14.38	0.7204

Compare expression of checked genes

Potri.002G181700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.