Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 139 / 1e-35 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT4G01550 138 / 1e-35 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) AT3G10490 127 / 1e-33 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G49530 131 / 3e-33 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT3G10480 130 / 6e-33 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT1G33060 130 / 3e-32 NAC ANAC014 NAC 014 (.1.2) AT4G01520 122 / 4e-31 NAC ANAC067 NAC domain containing protein 67 (.1) AT1G02250 122 / 1e-30 NAC ANAC005 NAC domain containing protein 5 (.1) AT5G24590 123 / 2e-30 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT1G02230 122 / 2e-30 NAC ANAC004 NAC domain containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182100 [exp] 464 / 2e-162 ND / Potri.014G107500 [exp] 400 / 2e-135 AT4G35580 143 / 3e-37 NAC transcription factor-like 9 (.1.2.3) Potri.002G182400 [exp] 152 / 4e-40 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 143 / 2e-39 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G107700 [exp] 141 / 3e-38 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 138 / 1e-37 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.002G154200 [exp] 137 / 1e-37 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.002G182000 [exp] 134 / 7e-36 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 132 / 8e-36 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005143 [exp] 189 / 4e-54 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10030175 [exp] 182 / 2e-50 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3) Lus10030174 [exp] 142 / 9e-39 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10005144 [exp] 132 / 3e-35 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 135 / 1e-33 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 127 / 4e-31 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10037939 [exp] 125 / 4e-31 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10033251 [exp] 124 / 3e-30 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10015587 [exp] 124 / 4e-30 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10023537 [exp] 122 / 4e-30 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G181800.2 pacid=42779860 polypeptide=Potri.002G181800.2.p locus=Potri.002G181800 ID=Potri.002G181800.2.v4.1 annot-version=v4.1 ATGGCGCCGGTGGGATACAGATTCCATCCAACTGAAGAAGAAATCATCTGTTATTATCTGAAACACAAAATGAACGGCCGTAATTCCCTCGTTGATGATC ATATTGGTGAGGTTGATCTTTATCGGCGGGATCCATGGGAATTACCTGTTTCTGCGAGAAAAAAGTCAGATGATCGAGTGTGGTATTACTTTTGTCGGCT TGATTACAAGCACTCAAATAGTAAACGAGCTAGCAGGGAAACCAAGAATGGATTCTGGAAATCGACCGGCAAGGTTCGTGATATCAAGGCTAAACGCACA AATGAGGTGATTGGTAGTAAGAGGACTCTGGTTTTCCAATACAGATGTCCTGATTCTAAAAAAGTGGTCGGGACCAGCTGGGTCATCCACGAATTCCATG CTAAAACTACCACTCCTGACCAGAGGGCTCTTGTTCTTTGCAAGTTAAAGCATAAGGCAGATGACTCGGCTGCTAATTTGCCTGATGATGAAGGCGAGCC TATTCGGGTTATGGGTTCTAATGTTGAAAATAATGCGGTGCTGAATAATAACCAAGAGGTAGATGCAGAGCTACCGCAATCTCTCTTTGACAGTCATGAC GTGGGTTTCAATTTTCCTTTCGCACTGCAGGCACAGAACCATGTGCAGAATAATAACCAAGAGGTAGATGCAGAGCTACTGCAATCTCTCTTTGACAGTC ATGAGGCGGGTTTTGATTTTCCTTTCACGCTGCAGGCACAGAACCATGTGCAGAATAATAACCAAGAGGTAGATGCAGAGCAACTGCAATCTCTCTTTGA CAGTCATGAGGCGGGTTTTGATTTTCCCCTTGCACTGCAGCCACAGAACCTTGTGCAGAATTTCCTTTCTGATGAAGAGGATATAGATTTTGCAGATTCA CTCCTAAATGACTACCCACCAACACCAAGGTCATCAAGTAATGCTTATGTTTTGGATACAAGTGACAGAGAAACTTATCTTGCCTATGGAGAGTCTCCAA ACTTGTATGGTGGGCACGGTAGTTCAAGAGCATACCAGCGGAAGCAAAGGGCTCATTGTGATGATACCCTCTTGATGGGGCCATCTTCCATGGATTCCAC CACTGTAACTAGGCATGAACAGATTAATTCAATTCAATCAGACTTTCCAAGTATCCACAAAGCTCAGCATGCACCCATACCCCACAGCTTCATGGAGCAG GAGGGAATTTCTGCTAAAGGAGATCAATTTCTGGGTGGGATTTCAAGTACAGCATCCAAACATAAGGCCAGAGAAGGTGCAAGGCAAGTTGCTAATATTG ATCTGCCTAAGAAGGTTGGCATAGAATCTGTAAAAGACAGGAAAATAGTTCAGGTTATGAACGCAAAGCCGGCTGTGAAGTCGAGATCAAATGGTTCGGC TGGCAATGAAAAGTGGGGCCGTTTCATTCACCTTGAAACAACTACATCAAGCCATACATCGACTCCTCCATCTGTTTATCTTTTCAATTTAGTCGTGGGT CTGTTTCTGTTCATAATCATGCTCAGAGAAGTGCTGATTGTTCACTGA
AA sequence Show only first row Show all	>Potri.002G181800.2 pacid=42779860 polypeptide=Potri.002G181800.2.p locus=Potri.002G181800 ID=Potri.002G181800.2.v4.1 annot-version=v4.1 MAPVGYRFHPTEEEIICYYLKHKMNGRNSLVDDHIGEVDLYRRDPWELPVSARKKSDDRVWYYFCRLDYKHSNSKRASRETKNGFWKSTGKVRDIKAKRT NEVIGSKRTLVFQYRCPDSKKVVGTSWVIHEFHAKTTTPDQRALVLCKLKHKADDSAANLPDDEGEPIRVMGSNVENNAVLNNNQEVDAELPQSLFDSHD VGFNFPFALQAQNHVQNNNQEVDAELLQSLFDSHEAGFDFPFTLQAQNHVQNNNQEVDAEQLQSLFDSHEAGFDFPLALQPQNLVQNFLSDEEDIDFADS LLNDYPPTPRSSSNAYVLDTSDRETYLAYGESPNLYGGHGSSRAYQRKQRAHCDDTLLMGPSSMDSTTVTRHEQINSIQSDFPSIHKAQHAPIPHSFMEQ EGISAKGDQFLGGISSTASKHKAREGARQVANIDLPKKVGIESVKDRKIVQVMNAKPAVKSRSNGSAGNEKWGRFIHLETTTSSHTSTPPSVYLFNLVVG LFLFIIMLREVLIVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	0	1
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	2.44	0.8799
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	3.16	0.8553
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	6.24	0.8438
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	6.92	0.8163
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112700 [exp]	7.07	0.7889
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	7.74	0.8332
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	7.74	0.8296
AT5G36930			Disease resistance protein (TI...		Potri.019G003942 [exp]	7.93	0.8115
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	9.53	0.7826
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	10.19	0.8057

Compare expression of checked genes

Potri.002G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.