Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 185 / 3e-55 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 171 / 2e-49 NAC ANAC014 NAC 014 (.1.2) AT5G24590 155 / 1e-44 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G49530 149 / 3e-42 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT4G01550 147 / 1e-41 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) AT3G17730 135 / 5e-39 NAC ANAC057 NAC domain containing protein 57 (.1) AT4G17980 135 / 7e-39 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G03200 137 / 1e-37 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G17260 136 / 3e-37 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 134 / 5e-36 NAC ANAC028 NAC domain containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182300 [exp] 510 / 0 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 329 / 7e-115 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G107700 [exp] 322 / 8e-112 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 319 / 5e-111 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.002G154200 [exp] 277 / 4e-95 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 247 / 3e-83 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.011G149300 [exp] 181 / 9e-53 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.012G007500 [exp] 171 / 2e-49 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 163 / 1e-46 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030174 [exp] 202 / 5e-65 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10005144 [exp] 192 / 5e-61 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 184 / 1e-54 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 184 / 2e-54 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 182 / 1e-53 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10015587 [exp] 160 / 7e-46 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10032919 [exp] 159 / 2e-45 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10005143 [exp] 148 / 1e-41 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10035373 [exp] 142 / 4e-40 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10030175 [exp] 144 / 2e-39 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G182000.1 pacid=42777052 polypeptide=Potri.002G182000.1.p locus=Potri.002G182000 ID=Potri.002G182000.1.v4.1 annot-version=v4.1 ATGACAAACAGAGCTTTATCTTTCCCATCATCTCCTGTTGGCTATGTATTTCGTCCGACCGATGAAGAATTGGTGAATCATTACCTGAGGTTAAAAATGC ATGGCGGCTATGAACAAGAAGTCAGCATAATCGCCGAAGTTAATGTGTGCGATTTTGAGCCTTGGATACTCCCTGGGCTTTCTACATATCAGTCAAACGA TCCAGAGTGTTATTTCTTTTGTCCTCGCAGTTATAAGTACGTAAATAGTCACCGGGCTAATAGGACAACTGAAGCTGGATACTGGAAAGTGACCGGCAAG AATCGTATAATCATAGCTAAATCTACCAAGGAGCATATTGCTACCAAGAAGACTCTGGTTTTCTACGAGAATCGTGTTCCTAATGGAGTCAAGACCGATT GGGTCATACACGAGTACCATCCAACTTTCAGCTTCCACAACCAGAGGGACTTCGTTCTCTGCAAACTGAAGAAACATCCAGATGAGAACATGCCAACATT TGAAGAAAGTGAATCAAGTTCCAATGTTCCTTATGGTCTTGGAAATCAAAATCCAACTGTGCGTAATTATCCCTTGATCTTGGAAGAAGGTGGACATACT GCCCAGATGGCTTCTAATTTAGCAAACAATAGGCTAGAGGAAGAGATCAATCAACTCCGAACACAACTGGAATCATTCCGTGGCTTTGATGATGGAGATT TCGGCCTGAATTCTGCCCTGCAGTTTTCACCTGGGAATTATATGTAA
AA sequence Show only first row Show all	>Potri.002G182000.1 pacid=42777052 polypeptide=Potri.002G182000.1.p locus=Potri.002G182000 ID=Potri.002G182000.1.v4.1 annot-version=v4.1 MTNRALSFPSSPVGYVFRPTDEELVNHYLRLKMHGGYEQEVSIIAEVNVCDFEPWILPGLSTYQSNDPECYFFCPRSYKYVNSHRANRTTEAGYWKVTGK NRIIIAKSTKEHIATKKTLVFYENRVPNGVKTDWVIHEYHPTFSFHNQRDFVLCKLKKHPDENMPTFEESESSSNVPYGLGNQNPTVRNYPLILEEGGHT AQMASNLANNRLEEEINQLRTQLESFRGFDDGDFGLNSALQFSPGNYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182000 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182300 [exp]	1.00	0.9667
					Potri.009G148700 [exp]	1.41	0.9412
AT1G64295			F-box associated ubiquitinatio...		Potri.010G224400 [exp]	3.87	0.8582
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	4.89	0.8442
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	5.19	0.8298
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027800 [exp]	5.29	0.8419
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G154200 [exp]	6.00	0.8468	NAC087
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113100 [exp]	8.48	0.8212
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.004G094100 [exp]	10.95	0.7965
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.019G099900 [exp]	11.74	0.7923

Compare expression of checked genes

Potri.002G182000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.