Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 158 / 4e-42 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 155 / 1e-40 NAC ANAC014 NAC 014 (.1.2) AT5G24590 140 / 4e-36 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G49530 139 / 8e-36 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT1G02230 136 / 2e-35 NAC ANAC004 NAC domain containing protein 4 (.1) AT5G17260 138 / 3e-35 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 137 / 4e-35 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G29035 130 / 7e-34 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT1G65910 135 / 1e-33 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G07680 130 / 1e-33 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154100 [exp] 308 / 1e-96 AT1G33060 136 / 2e-33 NAC 014 (.1.2) Potri.002G154000 [exp] 296 / 7e-95 AT1G33060 154 / 1e-40 NAC 014 (.1.2) Potri.014G108100 [exp] 218 / 3e-66 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.014G076100 [exp] 230 / 7e-66 AT4G17980 103 / 2e-24 NAC domain containing protein 71 (.1) Potri.014G075901 [exp] 206 / 1e-59 AT4G17980 106 / 1e-25 NAC domain containing protein 71 (.1) Potri.011G149300 [exp] 157 / 7e-41 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.002G182000 [exp] 147 / 8e-41 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.002G182300 [exp] 147 / 1e-40 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 143 / 1e-39 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033251 [exp] 155 / 9e-41 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 154 / 1e-40 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 148 / 3e-38 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10030174 [exp] 135 / 6e-36 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 140 / 1e-35 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 139 / 2e-35 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10005143 [exp] 136 / 1e-34 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10005144 [exp] 131 / 1e-34 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10043402 [exp] 130 / 2e-33 AT5G22290 262 / 4e-86 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10001648 [exp] 129 / 3e-33 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G182400.3 pacid=42777832 polypeptide=Potri.002G182400.3.p locus=Potri.002G182400 ID=Potri.002G182400.3.v4.1 annot-version=v4.1 ATGGCTTTCTTTCCTGTTTTAGGAAGAGGAATGAATAGCAAGATCCAATCAGTTATGGAAAATCCAACAGACGGAATGCCATCCGCACCAACAGTTGGAT ATAGGTTTCGTCCAACGGACGAAGAGTTAATTAGCAATTACTTGAAGCCAAAATTGCTCGGTGATGACTTGGAAGACTTACTCATCATCGCAGAGGTCAG AGTCTGTAAACATGAACCCTGGGATCTACCTGTTAAATCGGAAATTAAGTCCGATGATGCAGTTTGGTATTTCTTTTGCCCTCGCGATTTAAAGTACTCA AACAGCAGACGCTCTAACCGGAGAACGAAAGCCGGATTCTGGAAACCAACCGGCAAAACTATTAAAGTAAAGGCTAAGCGTAACAAGGAGGTGATTGGTA CTAAGAGGACTTTGGTTTTCTATAGATCAGCTAGTCCTAAAGCCGAGAGGACTGCATGGATCATTCATGAATACGAAGTGTTCGTATCTGATTCAAAGCT CTCTAATCTGGGGGAATATGTTCTCTGTAAATTGAAGAAAAAACTAGATGAGAAAACCAGTAAAGGTGTACCAAAAAACCATACCGCTTCTACCTCAGGT TTTGAAGCTGAACCAAGCTGCAGTATGGCTTCTGATTTTGAAAATCCAAATCGTAGTGAGTTGACAACGAATTCTGCTTGTGTCGAAAGTAAATCAAGCC ACCGTCTGGCTTCTGATTTTGAAAAACCAAACTCAAATGAGCTGCCGACTAACTTAGCTCAGGAAGCGAGTGAGTCGAGCCACTTTTCGACTACTAATAA CCAAAACCCAAATGAGCTGATGTCTAATTCGGCTTATTATGGAAATGGTTTGCACCACTCCATGGCTACTAATTTTGGTAATCCAAACTCAAATGAGCTG ATATCTAGTTCATTCTATGATGGACGTGGTGTACTCCACTCCATGACTTCAAATTATGAAATTCAATACCCAAATGAGCTGATTTCTAATTCGGCTTATG ATGGAAGTGGTGGTTTACTCCACTCCATGACTTCAAATTATGAAATTCAATACCCAAATGAGCTGATAGTTAATTCAGCTTATAATGTAAGTGAACAGAG CCACTATATGGCTTCTGATTCTGAAAATCAAAACCCAATAGAGACGACTTATGTGTCACCCTATGAGTATTGGTTGACGGCTTCTGATTTCGAAGATCCA TTATCACCTCTTCAACCTGAAGGTGAAACCGGTCCTTCCATGGAGATGCCTTTTCAGTTTACAAATTGCCTACTGGCTTCTGATTTTGAAAATCAAAATA TAGACAAGGAAACAGATATATCAGCCCCCGTTGAAGGTGAAAGGAGTTCTCCTACAGTAATGCCTTTGGATTTGGAAAATCAAAATCCTTGGGGGAAGAT TGATATGTCAACCCTTGAAGAAGGTGGTTTGTGTTGCTTGATGGCTTCACCAGAAAGCAGTCCAGCAGATGATTCGTTTCTGCAGTTTCCACAGCTAAGC CCTGAACTGGCATTGGCTGAGCTGGAAGCATTCCTGGAGCTAGAGGACAGCCTTAACCCTCCGCCTCAGCCACCTGCATCTACAAGCACCGAGGAAGTCC CTAATTATAAGGGCATTGGTTCTGTGTCTTATTGA
AA sequence Show only first row Show all	>Potri.002G182400.3 pacid=42777832 polypeptide=Potri.002G182400.3.p locus=Potri.002G182400 ID=Potri.002G182400.3.v4.1 annot-version=v4.1 MAFFPVLGRGMNSKIQSVMENPTDGMPSAPTVGYRFRPTDEELISNYLKPKLLGDDLEDLLIIAEVRVCKHEPWDLPVKSEIKSDDAVWYFFCPRDLKYS NSRRSNRRTKAGFWKPTGKTIKVKAKRNKEVIGTKRTLVFYRSASPKAERTAWIIHEYEVFVSDSKLSNLGEYVLCKLKKKLDEKTSKGVPKNHTASTSG FEAEPSCSMASDFENPNRSELTTNSACVESKSSHRLASDFEKPNSNELPTNLAQEASESSHFSTTNNQNPNELMSNSAYYGNGLHHSMATNFGNPNSNEL ISSSFYDGRGVLHSMTSNYEIQYPNELISNSAYDGSGGLLHSMTSNYEIQYPNELIVNSAYNVSEQSHYMASDSENQNPIETTYVSPYEYWLTASDFEDP LSPLQPEGETGPSMEMPFQFTNCLLASDFENQNIDKETDISAPVEGERSSPTVMPLDLENQNPWGKIDMSTLEEGGLCCLMASPESSPADDSFLQFPQLS PELALAELEAFLELEDSLNPPPQPPASTSTEEVPNYKGIGSVSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182400 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Potri.019G116500 [exp]	9.48	0.8364
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.014G108100 [exp]	12.72	0.7660	NAC097
AT1G53540			HSP20-like chaperones superfam...		Potri.010G175200 [exp]	12.80	0.8298	Pt-HSP17.8
					Potri.007G126750 [exp]	13.41	0.8029
AT1G17780			unknown protein		Potri.001G376800 [exp]	14.00	0.8068
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.001G307500 [exp]	15.87	0.7838
AT5G62520		SRO5	similar to RCD one 5 (.1.2)		Potri.012G081100 [exp]	16.91	0.7964
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.002G048200 [exp]	16.97	0.7332
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.004G135400 [exp]	16.97	0.7947
AT3G05700			Drought-responsive family prot...		Potri.002G200500 [exp]	17.88	0.7590

Compare expression of checked genes

Potri.002G182400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.