Plant FIBer expression Database

Potri.002G182600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01560 481 / 1e-171 MEE49 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
AT1G63780 155 / 1e-44 IMP4 Ribosomal RNA processing Brix domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G108400
[exp]
546 / 0 AT4G01560 475 / 4e-169 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Potri.003G201100
[exp]
155 / 9e-45 AT1G63780 488 / 2e-176 Ribosomal RNA processing Brix domain protein (.1)
Potri.001G024500
[exp]
155 / 1e-44 AT1G63780 485 / 3e-175 Ribosomal RNA processing Brix domain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030171
[exp]
501 / 4e-179 AT4G01560 508 / 0.0 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Lus10007860
[exp]
486 / 5e-173 AT4G01560 495 / 7e-177 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Lus10035745
[exp]
146 / 5e-41 AT1G63780 468 / 2e-168 Ribosomal RNA processing Brix domain protein (.1)
Lus10037326
[exp]
142 / 2e-39 AT1G63780 463 / 3e-166 Ribosomal RNA processing Brix domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0458 IIaaRS-ABD PF04427 Brix Brix domain
Representative CDS sequence
>Potri.002G182600.2 pacid=42778150 polypeptide=Potri.002G182600.2.p locus=Potri.002G182600 ID=Potri.002G182600.2.v4.1 annot-version=v4.1
ATGGGGGGGAAGAGAAGGACGAGCGAAAGCGAGGCAATGGAAGAATATGGCAGCGATGTAGAGTTAGACAGAAAGGAGAAGAAGAAGAAGATGGAGAAGG
GGAAAACGAGAGAAATACTCCCGTCAATGATAAAGAACAAGGAGAAGAGATCTGCCGTACACGCCAAACTCAAGCATGAAAAGAAAGTCGAGAAACGCAA
GAAGCTTAAAGCCCGAGACGCCGAAGAGAAGCGAGCTCTCGAGCTCGGTGAGGAGCCTCCTCCAAGGAAGATTCCACGCACCATTGAAAATACTAGAGAG
AATGACGAGACTGTATGCAAGCCTGACGACGAGGAGCTATTCGCTGGCAATGATGCTGACGAATTTAGCTCCATCTTAAAACGTGAACGGACTCCGAAGA
TATTGATCACCACTTCCCGTTTTAACTCTACTAGGGGACCGGCTTTTATATCAGAACTACTTCAAGTGATCCCAAATGCACATTATTACAAGAGAGGAAC
TTATGACTTGAAAAAGATTGTAGAATATGCAAAGAAGCAGGATTTTACTTCTCTTATAGTTGTTCACACCAACCGCAGGGAACCAGATGCTCTCTTGATC
ATTGGCTTGCCTGATGGCCCTACTGCCCATTTCAAACTCTCTCGGCTTGTTCTACGCAAGGATATCAAGAATCATGGAAATCCCACCAGTCATGAGCCCG
AGCTGGTCTTGACTAACTTTACAACTCGTCTGGGACATCGTGCTGGGAGAATAATACAGTCACTTTTCCCGCAAGAACCGAATTTCCGGGGTCGAAGAGT
TGTAACCTTTCACAATCAACGTGATTATATATTCTTCCGGCATCATCGTTACATCTTTGAAACCAAAGAGAGCAAACAGAGTGATTCAAAAGGTAAAAAA
GGAAAAGATGGCAAGGGTGAGAAGATCTCTCAACAGAAAGTGATTGCACGCCTTCAGGAGTGTGGTCCTAGATTTACACTGAAGTTGAGAAGTCTCCAAC
ATGGAACATTTGATACCAAAGGCGGTGAATATGAATGGGTTCACAAGCCGGAAATGGACACCAGCCGGAGGAGGTTTTTCTTGTGA
AA sequence
>Potri.002G182600.2 pacid=42778150 polypeptide=Potri.002G182600.2.p locus=Potri.002G182600 ID=Potri.002G182600.2.v4.1 annot-version=v4.1
MGGKRRTSESEAMEEYGSDVELDRKEKKKKMEKGKTREILPSMIKNKEKRSAVHAKLKHEKKVEKRKKLKARDAEEKRALELGEEPPPRKIPRTIENTRE
NDETVCKPDDEELFAGNDADEFSSILKRERTPKILITTSRFNSTRGPAFISELLQVIPNAHYYKRGTYDLKKIVEYAKKQDFTSLIVVHTNRREPDALLI
IGLPDGPTAHFKLSRLVLRKDIKNHGNPTSHEPELVLTNFTTRLGHRAGRIIQSLFPQEPNFRGRRVVTFHNQRDYIFFRHHRYIFETKESKQSDSKGKK
GKDGKGEKISQQKVIARLQECGPRFTLKLRSLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.002G182600
[exp]
0 1
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
1.73 0.8649
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) ... Potri.015G133400
[exp]
2.82 0.7895 PRH75.2
AT5G58370 P-loop containing nucleoside t... Potri.019G128000
[exp]
4.00 0.7744
AT2G40360 Transducin/WD40 repeat-like su... Potri.004G222500
[exp]
6.16 0.8125
AT2G45520 unknown protein Potri.014G072400
[exp]
6.63 0.7560
AT2G06040 unknown protein Potri.006G142200
[exp]
7.34 0.7822
AT3G09720 P-loop containing nucleoside t... Potri.019G065300
[exp]
7.74 0.7888
AT1G29320 Transducin/WD40 repeat-like su... Potri.015G092400
[exp]
9.79 0.7408
AT5G66540 unknown protein Potri.015G078500
[exp]
11.40 0.7534
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
11.83 0.7751

Potri.002G182600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.