Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 299 / 1e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 299 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01450 248 / 5e-80 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G01430 233 / 7e-74 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G01070 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 202 / 2e-62 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 180 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G11450 176 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 174 / 5e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 172 / 3e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108500 [exp] 501 / 2e-179 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 354 / 3e-121 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 344 / 4e-117 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 191 / 2e-57 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 187 / 4e-56 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 178 / 1e-52 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 174 / 7e-51 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 172 / 2e-50 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G029100 [exp] 172 / 3e-50 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 359 / 7e-123 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 358 / 1e-122 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030169 [exp] 219 / 7e-70 AT3G30340 211 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 188 / 2e-56 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10020987 [exp] 188 / 5e-56 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 184 / 2e-54 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10022187 [exp] 174 / 4e-51 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10001523 [exp] 166 / 1e-47 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 164 / 9e-47 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 163 / 1e-46 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G182700.1 pacid=42778075 polypeptide=Potri.002G182700.1.p locus=Potri.002G182700 ID=Potri.002G182700.1.v4.1 annot-version=v4.1 ATGAGTGACGGAGGACAATGGAAGCCTGTTGTGGGAATGGTGGTCGTTAATTTTGCCTTCGCAATAGTGAATGTGCTTTTTAAAAAGATTCTGGATGAAG GAACGAACAGTATGGTTATTGCTACATACCGACTATCAACTTCTGCAATTTTCTTGGCGCCTGTTTCTTACTATTGGGAAAGGAAAAGCAGACCTAGGCT AACAGCTTCCATCTTCTGCCACCTCTTCCTCGGTGCCCTTTTCGGGTTAACTCTCACACAATATTTATTCCTTAAGGGACTTGAGTATATATCTGCTACC TTCGCCTGTGCATTCCTCAACACGGTCCCTGTAAACACGTTCATACTAGCACTACTTTTTGGTATAGAAAAAGCGAGCATGACAAGCAAGGCAGGAAGAA CAAAGGTGTTAGGTGCACTTATATGCATGGGAGGAGCTGTCCTATTAATCTTTTATAAGGGAATCCCATTAACCAATTCACATTCAAAAGCTGCAACAAC TGACATCCTAAACCATGCTGACACTATGATCTCAGGGAAGAAGAGACAAAGGTGGGTGGTTGGTTCGATACTTTCTCTTGCAGGCTGCTTCACGTGGTCT TTGTGGTTCCTCATTCAAGCTAAGATTAGCAAAAGTTACCCATTTCAATATTCTAGCACCGCCCTTATGTCCTTCTTGGGCGCAGTCCAGTCTGCTATCT TGAGTTTAAGCATTGAAAGGAATTTTTCCATGTGGATTCTGAGAACAAAATTGGAGATTATAAGCGTCCTTTATGCTGGAATCATAGGATCTGGCTTGTG CTATGTTGGCATGTCATGGTGCGTCAAACGAAGGGGTCCTGTGTTCACATCAGCATTCACCCCTTTCACACAGATATTTGCTGCTATGCTTGATTTCTCC ATCCTGCATGAACAAATTTATCTGGGAAGTGTCCTGGGTTCTGTCCTAGTTATACTTGGTCTGTACATTCTACTTTGGGGTAAAAGCATTGAAGCAGGGG ATTGTGGAGAGAAGCAAGCCCACCTAGCCAGGGAAGAGGAACACCGTGACACCGAAGCACAGATACCAGCAACAATTTCAAAGAGTAATCCATAA
AA sequence Show only first row Show all	>Potri.002G182700.1 pacid=42778075 polypeptide=Potri.002G182700.1.p locus=Potri.002G182700 ID=Potri.002G182700.1.v4.1 annot-version=v4.1 MSDGGQWKPVVGMVVVNFAFAIVNVLFKKILDEGTNSMVIATYRLSTSAIFLAPVSYYWERKSRPRLTASIFCHLFLGALFGLTLTQYLFLKGLEYISAT FACAFLNTVPVNTFILALLFGIEKASMTSKAGRTKVLGALICMGGAVLLIFYKGIPLTNSHSKAATTDILNHADTMISGKKRQRWVVGSILSLAGCFTWS LWFLIQAKISKSYPFQYSSTALMSFLGAVQSAILSLSIERNFSMWILRTKLEIISVLYAGIIGSGLCYVGMSWCVKRRGPVFTSAFTPFTQIFAAMLDFS ILHEQIYLGSVLGSVLVILGLYILLWGKSIEAGDCGEKQAHLAREEEHRDTEAQIPATISKSNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01440			nodulin MtN21 /EamA-like trans...		Potri.002G182700 [exp]	0	1
					Potri.018G104400 [exp]	5.00	0.8389
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.003G167201 [exp]	7.14	0.8161
AT5G42200			RING/U-box superfamily protein...		Potri.002G017400 [exp]	7.68	0.8967
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	15.09	0.8707
AT5G27690			Heavy metal transport/detoxifi...		Potri.010G024700 [exp]	19.13	0.8627
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	24.33	0.8594
					Potri.005G168401 [exp]	31.41	0.8543
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	31.93	0.7848
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.003G053900 [exp]	33.46	0.7430
AT4G08300			nodulin MtN21 /EamA-like trans...		Potri.005G176200 [exp]	36.00	0.8540

Compare expression of checked genes

Potri.002G182700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.