Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01570 1043 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 208 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 199 / 9e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 194 / 1e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 192 / 5e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 196 / 8e-52 PGR3 proton gradient regulation 3 (.1) AT1G12300 189 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 187 / 3e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 184 / 9e-49 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G64100 182 / 2e-48 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183100 [exp] 1628 / 0 AT4G01570 1023 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 237 / 4e-66 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 217 / 1e-58 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 209 / 2e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 199 / 1e-52 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 187 / 8e-49 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 186 / 1e-48 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 181 / 5e-48 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 180 / 5e-48 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030167 [exp] 1026 / 0 AT4G01570 886 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007863 [exp] 1021 / 0 AT4G01570 887 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 240 / 5e-67 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 211 / 2e-57 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 203 / 1e-54 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 197 / 6e-53 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 196 / 9e-52 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026747 [exp] 194 / 8e-51 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 181 / 1e-46 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 179 / 1e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.002G182900.4 pacid=42779591 polypeptide=Potri.002G182900.4.p locus=Potri.002G182900 ID=Potri.002G182900.4.v4.1 annot-version=v4.1 ATGTCAAGATGCAGAACAACAACCAGACAACTAAGACATTCATGTTTTGGATTCCCAAAGGAAACCCCGAAACCAAACACATTACACCACGCAAGAACCC CTCTATCAACATCTTCATCGTCATCGTACCAAATGGGAAACATACTCCTGGTGGCTTATCTAACCAAGACCCTCTCCGAGTCCGGCACTCGTAGTCTGGA CCCAGATTCAATTCCTCTATCAGAATCTCTGGTTCTCCAAATCCTACGGAGGAACTCTCTTGACAGCTCTAAGAAAATGGAATTTTTCAAATGGTGTTCT GTCCGGCATATTTACAAACACTCGGTGAGCACATACTCTCAAATGTTTTCCACTTTGTGCCGTTCTGGATACCTTGAAGAAGTTCCTGATTTGCTGAATT CAATGAAGAATGATGGTGTTGTTGTTGGGTCTGAGACTTTTAAGTTGTTGCTTGATGCATTTATTCGATCTGGGAAGTTTGACTCTGCACTTGACATTCT TGATCACATGGAGGAATTAGGATCTAACCCGAACCCCCATATGTATGATTCTATTATCGTTGCACTTGCTAAGAAAAACCAGGTGGGTTTAGCATTGTCT ATAATGTTTAAGCTTCTAGAAGCTTCTGATGGTAATGAAGAGACTGCTGTTGGTGTTTCACTTCCGGGCTCCGTTGCATGCAACGCTTTGTTGGTTGCGC TTCGAAATGGAGAAATGAAAGTAGAATTCAAAACTGTTTTTGCTAAATTGAGGGGGGAAAGGGGGTTCGAGTTGAATACATGGGGTTATAACATCTGCAT TCATGCATTTGGTTGTTGGGGTGATCTGACTACTTCTTTGAGGCTTTTTAAAGAGATGAAGGAAAAGAGTTTGGCTTCTGGGTCATTGGATCCTGATTTG TGCACCTATAATAGCCTGATTCATGTTCTATGCTTGGCTGGGAAGGTGAAGGACGCAGTGATTGTGTATGAGGAATTAAAGGTGTCTGGTCATGAGCCCG ATGCCTTTACTTATCGAATACTTATACAAGGGTGCTGTAAATCTTATCAAATGGAAGATGCAACAAAGATTTTTAGTGAAATGCAGTACAATGGGTTCCT TCCAGATACCGTAGTGTACAATTCTCTTTTAGATGGGATGTTCAAGGCAAGGAAAGTTATGGAAGCATGCCAGTTGTTCGAGAAGATGGTTCAGGATGGA GTAAGGGCCTCATGTTGGACGTACAATATTCTGATTGATGGGTTGTGCAAGAATGGCAGGGCTGAAGCTGGTTACAATTTATTTTGTGGTTTGAAGAAGA AGGGTCAATTTGTGGATGCTGTTACCTACAGCATTGTTGTGTTGCTACTTTGTAGGAAAGGTCATCTTGAGGACGCACTGCACTTGGTGGAAGAAATGGA GGAAAGAGGCTTTGTTGTTGACCTAATCACTATAACATCGCTCTTGATTGCATTTCATAAACAAGGTAGGTGGGATTGCACAGAGAGGTTGATGAAGCAC ATAAGGGATGTTAATCTATTACCAAATGTTCTCAAATGGAGGGCAGATATGGAGGCTTCATTGAAAAATCCACCAAGAAGTAGAGAGGATCATACTCCCA TGTTTCCATCTACTGGTGGCCTCCAGGAAATTATGAGTTCAATAAGTTCCCCTAAGTCAAGGTCAGATGATGGTGCGACTGAGGATGAGAAGAGTTCGTC TGCTGACACTGATCAGTGGTCATCATCTCCATACATGGATCATTTGGCCAATCAAGCGAAATCCACTGACCTTTCTTCTCAGCTATTTTCGCTGGCTAGG GGCCAGAGAGTTCAAGCTAAAGGGGCAGGCTCTTTTGATATTGATATGGTGAATACGTTCTTGTCTATATTTTTGGCCAAGGGAAAGCTGAGCTTAGCCT GCAAGTTGTTTGAGATATTCACTGATATGGGCGTGGACCCTGTGAGTTACACTTACAATTCTATCATGAGTTCTTTTGTGAAGAAGGGTTATTTCAATAG GGCATGGGATGTTTTTAATGAAATGGGTGAAAAGGTTTGCCCACCAGACATCGCAACATACAATTTGGTGATTCAAGGGTTGGGGAAAATGGGGAGAGCA GATCTAGCCAGCTCCGTTCTAGATAAGCTAATGAAGCAAGGTGGTTACCTTGACATTGTTATGTATAACACCCTGATTGATGCACTGGGAAAGGCTGGTA GGATTGATGAAGCTAACAATCTTTTCGAACAGATGAAGACTAGTGGATTAAATCCTGATGTGGTCACTTATAATATTATGATTGAAGTTCATAGCAAGAC AGGTCGGTTGAAAGACGCATATAAATTCTTAAAAATGATGTTGGACGCAGGCTGCTTGCCAAACCATGTCACAGACACGACTTTGGACTTTCTAGCAAAA GAGATTGAAAAAATAAGGTACCAAAAGGCATCAATTATGCGCCAAAAAGATGATTCTCCTTGA
AA sequence Show only first row Show all	>Potri.002G182900.4 pacid=42779591 polypeptide=Potri.002G182900.4.p locus=Potri.002G182900 ID=Potri.002G182900.4.v4.1 annot-version=v4.1 MSRCRTTTRQLRHSCFGFPKETPKPNTLHHARTPLSTSSSSSYQMGNILLVAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCS VRHIYKHSVSTYSQMFSTLCRSGYLEEVPDLLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALAKKNQVGLALS IMFKLLEASDGNEETAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKLRGERGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDL CTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDG VRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAVTYSIVVLLLCRKGHLEDALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKH IRDVNLLPNVLKWRADMEASLKNPPRSREDHTPMFPSTGGLQEIMSSISSPKSRSDDGATEDEKSSSADTDQWSSSPYMDHLANQAKSTDLSSQLFSLAR GQRVQAKGAGSFDIDMVNTFLSIFLAKGKLSLACKLFEIFTDMGVDPVSYTYNSIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRA DLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKTSGLNPDVVTYNIMIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVTDTTLDFLAK EIEKIRYQKASIMRQKDDSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	1.73	0.9348
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	2.00	0.9165
AT4G39680			SAP domain-containing protein ...		Potri.007G086900 [exp]	3.16	0.9012
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	3.46	0.9042	Pt-SPY.2
AT2G25580			Tetratricopeptide repeat (TPR)...		Potri.014G116600 [exp]	4.47	0.8837
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	5.19	0.9056	Pt-RPB1.1
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	5.47	0.9010
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	8.12	0.8941
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	8.94	0.8878
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	9.79	0.8936

Compare expression of checked genes

Potri.002G182900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.