Plant FIBer expression Database

Potri.002G183000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63140 521 / 0 ATPAP29, PAP29 purple acid phosphatase 29 (.1)
AT2G46880 400 / 7e-138 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
AT5G57140 348 / 1e-117 ATPAP28, PAP28 purple acid phosphatase 28 (.1)
AT3G10150 103 / 2e-24 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G183200
[exp]
779 / 0 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1)
Potri.014G109100
[exp]
734 / 0 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1)
Potri.006G074300
[exp]
374 / 1e-127 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1)
Potri.006G074500
[exp]
343 / 1e-115 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
Potri.016G042500
[exp]
114 / 7e-28 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009863
[exp]
618 / 0 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1)
Lus10010289
[exp]
600 / 0 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1)
Lus10022947
[exp]
352 / 9e-119 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1)
Lus10027596
[exp]
351 / 2e-118 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1)
Lus10018030
[exp]
103 / 3e-24 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1)
Lus10031039
[exp]
89 / 4e-19 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.002G183000.2 pacid=42777483 polypeptide=Potri.002G183000.2.p locus=Potri.002G183000 ID=Potri.002G183000.2.v4.1 annot-version=v4.1
ATGGCGAAGAAGAACACACCAAGAATTTCACCCTCCCACTTTTTGGGGGTTGTGGTTTTTTCTCTATGCTTCTTCGTTCCAAAATCTGTGTTGGGTGTGA
AAAAAGAGCTGCGATTTAGAAAAAATGGAGAGTTCAAGATACTGCAAGTGGCAGATATGCACTTTGCGGATGGCAAGACCACGTCTTGCCTCGATGTGTT
CCCAAATCAGATGCCTACTTGCTCTGACCTCAACACCACTGCCTTTGTTGAGCGCATGATTCAAGCTGAGAAGCCCGATTTTATTGTTTTCACTGGGGAT
AACATCTTTGGCTTTGATGCCACGGATGCTGCAAAATCACTGAGTGCTGCATTTCAGCCTGCAATTGCATCAAACATCCCGTGGGCTGCTATTTTGGGGA
ACCATGACCAAGAATCCACTTTGTCAAGGGAAGGGGTAATGAAACATATTGTTGGCCTTAAGAATACTCTCTCTCAAGTCAATCCTGCGGAGGTACACAT
CATTGATGGTTTTGGGAACTATAACCTGGAGATTGGCGGGGTTAAAGGTTCACGATTTGAAAATAAATCAGCTCTTAATCTTTATTTCCTTGATAGCGGA
GACTACTCCACAGTCCCGGCAATCCCTGGCTATGGTTGGATTAAACCCTCGCAGCAGCTTTGGTTCCAACGCACCTCTGCGAAGCTTCGGAGAGCATACA
TGAGACAGCCAGAGGCTCAGAAAGGACCTGCACCTGGGCTGGTGTACTTTCACATCCCATTGCCTGAATTTGCAAGTTTTGATTCATCAAACTTCACAGG
AGTGAGACAAGAAGGCATTAGCTCTGCTTCTGTGAACTCGGGCTTCTTCACAACCATGGTAGAAGCTGGGGATGTGAAAGGTGTTTTCACCGGACATGAT
CATCTCAATGACTTCTGTGGTGAGCTTACTGGTATACAACTTTGTTATGCTGGGGGTTTTGGATACCATGCCTATGGGAAGGCAGGGTGGTCAAGGAGAG
CGAGGGTGGTGCTGGCATCTTTGGAAAAGACAGAGCAAGGAGGTTGGGGAGCTGTCAAGTCTATCAAAACATGGAAGCGCCTTGATGATGAACACCTTAC
CACTGTAGATGGTCAGGTCCTTTGGAGCAAGAGCCATGCAGATGTTTCGTATTTAAGCAACAAAGTACATAAGACATTGGAAATGCGTGCAGTGCTAGGT
TGTTCACTTTTGCTTTATGCCGCCAAAAATCATGCTTGA
AA sequence
>Potri.002G183000.2 pacid=42777483 polypeptide=Potri.002G183000.2.p locus=Potri.002G183000 ID=Potri.002G183000.2.v4.1 annot-version=v4.1
MAKKNTPRISPSHFLGVVVFSLCFFVPKSVLGVKKELRFRKNGEFKILQVADMHFADGKTTSCLDVFPNQMPTCSDLNTTAFVERMIQAEKPDFIVFTGD
NIFGFDATDAAKSLSAAFQPAIASNIPWAAILGNHDQESTLSREGVMKHIVGLKNTLSQVNPAEVHIIDGFGNYNLEIGGVKGSRFENKSALNLYFLDSG
DYSTVPAIPGYGWIKPSQQLWFQRTSAKLRRAYMRQPEAQKGPAPGLVYFHIPLPEFASFDSSNFTGVRQEGISSASVNSGFFTTMVEAGDVKGVFTGHD
HLNDFCGELTGIQLCYAGGFGYHAYGKAGWSRRARVVLASLEKTEQGGWGAVKSIKTWKRLDDEHLTTVDGQVLWSKSHADVSYLSNKVHKTLEMRAVLG
CSLLLYAAKNHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63140 ATPAP29, PAP29 purple acid phosphatase 29 (.1... Potri.002G183000
[exp]
0 1
AT2G02360 ATPP2-B10 phloem protein 2-B10 (.1) Potri.001G050100
[exp]
2.00 0.8364
AT2G38450 unknown protein Potri.016G128700
[exp]
2.82 0.8545
AT5G25240 unknown protein Potri.006G190100
[exp]
4.24 0.8200
AT1G75560 zinc knuckle (CCHC-type) famil... Potri.004G161800
[exp]
4.79 0.7989
AT2G23060 Acyl-CoA N-acyltransferases (N... Potri.007G054200
[exp]
5.47 0.8162 Pt-HLS1.2
AT2G46410 MYB CPC CAPRICE, Homeodomain-like supe... Potri.007G122800
[exp]
6.48 0.8363
AT1G78290 SRK2C, SNRK2-8,... SNF1-RELATED PROTEIN KINASE 2C... Potri.002G099700
[exp]
6.92 0.8343
AT5G06430 Thioredoxin superfamily protei... Potri.014G035300
[exp]
7.61 0.7885
AT2G42120 POLD2 DNA polymerase delta small sub... Potri.016G045800
[exp]
9.16 0.8258
Potri.003G018400
[exp]
11.61 0.8307

Potri.002G183000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.