Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01570 1021 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 205 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 182 / 3e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 178 / 4e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 177 / 7e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 172 / 9e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 173 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 172 / 5e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 169 / 3e-44 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 170 / 9e-44 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182900 [exp] 1598 / 0 AT4G01570 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 224 / 9e-62 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 216 / 3e-58 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 195 / 1e-52 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 189 / 2e-49 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 188 / 3e-49 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 176 / 4e-45 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 169 / 6e-44 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 171 / 7e-44 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030167 [exp] 999 / 0 AT4G01570 886 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007863 [exp] 994 / 0 AT4G01570 887 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 231 / 4e-64 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 199 / 4e-53 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 196 / 3e-52 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 190 / 1e-49 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10039056 [exp] 179 / 7e-47 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 179 / 3e-46 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 172 / 6e-44 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 167 / 7e-43 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.002G183100.6 pacid=42780239 polypeptide=Potri.002G183100.6.p locus=Potri.002G183100 ID=Potri.002G183100.6.v4.1 annot-version=v4.1 ATGTCAAGATGCAGAACAACAACCAGACAACTAAGACATTCATGTTTTGGATTCCCAAAGGAAACCCCGAAACCAAACACATTACACCACGCAAGAACCC CTCTATCAACATCTTCATCGTCATCGTACCAAATGGGAAACATACTCCTGGTGGCTTATCTAACCAAGACCCTCTCCGAGTCCGGCACTCGTAGTCTGGA CCCAGATTCAATTCCTCTTTCAGAATCTCTGGTTCTCCAAATCCTACGGAGGAACTCTCTTGACAGCTCTAAGAAAATGGAATTTTTCAAATGGTGTTCT GTCCGGCATATTTACAAACACTCGGTGAGCACATACTCTCAAATGTTTTCCACTTTGTGCCGTTCTGGGTACCTTGATGAAGTTCCTGATTTGCTGAATT CAATGAAGAATGATGGTGTTGTTGTTGGGTCTGAGACTTTTAAGTTGTTGCTTGATGCATTTATTCGATCTGGGAAGTTTGACTCTGCACTTGACATTCT TGATCACATGGAGGAATTAGGATCTAACCCGAACCCCCATATGTATGATTCTATTATCGTTGCACTTGCTAAGAAAAACCAGGTGGGTTTAGCATTGTCT ATAATGTTTAAGCTTCTAGAAGCTTCTGATGGTAATGAAGAGAATGCTGTTGGTGTTTCACTTCCGGGCTCCGTAGCATGCAACGCTTTGTTGGTTGCGC TTCGAAATGGAGAAATGAAAGTAGAATTCAAAACTGTTTTTGCTAAATTGAGGGGAAAAGGGGGGTTCGAGTTGAATACATGGGGTTATAACATCTGCAT TCATGCATTTGGTTGTTGGGGTGATCTGACTACTTCTTTGAGGCTTTTTAAAGAGATGAAGGAAAAGAGTTTGGCTTCTGGGTCATTGGATCCTGATTTG TGCACCTATAATAGCCTGATTCATGTTCTATGCTTGGCTGGGAAGGTGAAGGACGCAGTGATTGTGTATGAGGAATTAAAGGTGTCTGGTCATGAGCCCG ATGCCTTTACTTATCGAATACTTATACAAGGGTGCTGTAAATCTTATCAAATGGAAGACGCAACAAAGATTTTTAGTGAAATGCAGTACAATGGGTTCCT TCCAGATACCGTAGTGTACAATTCTCTTTTAGATGGGATGTTCAAGGCAAGGAAAGTTATGGAAGCATGCCAGTTGTTCGAGAAGATGGTTCAGGATGGA GTAAGGGCCTCATGTTGGACGTACAATATTCTGATTGATGGGTTGTGCAAGAATGGCAGGGCTGAAGCTGGTTACAATTTATTTTGTGGTTTGAAGAAGA AGGGTCAATTTGTGGATGCTGTTACCTACAGCATTGTTGTGTTGCTACTTTGTAGGAAAGGTCATCTTGAGGAAGCACTGCACTTGGTTGAAGAAATGGA GGAAAGAGGCTTTGTTGTTGACCTAATCACTATAACATCGCTCTTGATTGCATTTCATAAACAAGGTAGGTGGGATTGCACAGAGAGGTTGATGAAGCAC ATAAGGGATGTTAATCTATTACCAAATGTTCTCAAATGGAGGGCAGATATGGAGGCTTCATTGAAAAATCCACCAAGAAGTAGAGAGGATTATACTCCCA TGTTTCCATCTACTGGTGGCCTCCAGGAAATTATGAGTTCAATAAGTTCCCCTAAGTCAAGGTCAGATGATGGTGCGACTGAGGATGAGAAGAGTTCGTC TGCTGACACTGATCAGTGGTCATCATCTCCATACATGGATCATTTGGCCAATCAAGCGAAATCCACTGACCTTTCTTCTCAGCTATTTTCGCTGGCTAGG GGCCAGAGAGTTCAAGCTAAAGGGGCAGGCTCTTTTGATATTGATATGGTGAATACGTTCTTGTCTATATTTTTGGCCAAGGGAAAGCTGAGCTTAGCCT GCAAGTTGTTTGAGATATTCACTGATATGGGCGTGGACCCTGTGAGTTACACTTACAATTCTATCATGAGTTCTTTTGTGAAGAAGGGTTATTTCAATAG GGCATGGGATGTTTTTAATGAAATGGGTGAAAAGGTTTGCCCACCAGACATCGCAACATACAATTTGGTGATTCAAGGGTTGGGGAAAATGGGGAGAGCA GATCTAGCCAGCTCCGTTCTAGATAAGCTAATGAAGCAAGGTGGTTACCTTGACATTGTTATGTATAACACCCTGATTGATGCACTGGGAAAGGCTGGTA GGATTGATGAAGCTAACAATCTTTTCGAACAGATGAAGATTAGTGGATTAAATCCTGATGTGGTCACTTATAATATTATGATTGAAGTTCATAGCAAGAC AGGTCGGTTGAAAGACGCATATAAATTCTTAAAAATGATGTTGGACGCAGGCTGCTTGCCAAACCATGTCACAGACACGACTTTGGACTTTCTAGCAAAA GAGATTGAAAAACTAAGGTACCAAAAGGCATCAATTATGCGCCAAAAAGATGATTCGCCTTGA
AA sequence Show only first row Show all	>Potri.002G183100.6 pacid=42780239 polypeptide=Potri.002G183100.6.p locus=Potri.002G183100 ID=Potri.002G183100.6.v4.1 annot-version=v4.1 MSRCRTTTRQLRHSCFGFPKETPKPNTLHHARTPLSTSSSSSYQMGNILLVAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCS VRHIYKHSVSTYSQMFSTLCRSGYLDEVPDLLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILDHMEELGSNPNPHMYDSIIVALAKKNQVGLALS IMFKLLEASDGNEENAVGVSLPGSVACNALLVALRNGEMKVEFKTVFAKLRGKGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDL CTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDG VRASCWTYNILIDGLCKNGRAEAGYNLFCGLKKKGQFVDAVTYSIVVLLLCRKGHLEEALHLVEEMEERGFVVDLITITSLLIAFHKQGRWDCTERLMKH IRDVNLLPNVLKWRADMEASLKNPPRSREDYTPMFPSTGGLQEIMSSISSPKSRSDDGATEDEKSSSADTDQWSSSPYMDHLANQAKSTDLSSQLFSLAR GQRVQAKGAGSFDIDMVNTFLSIFLAKGKLSLACKLFEIFTDMGVDPVSYTYNSIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRA DLASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNIMIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVTDTTLDFLAK EIEKLRYQKASIMRQKDDSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	0	1
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	1.00	0.9294
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	1.73	0.9076
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	2.82	0.9080
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	4.89	0.8908
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	5.47	0.9010
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	5.47	0.8985
AT2G04860			Tetratricopeptide repeat (TPR)...		Potri.014G029500 [exp]	6.00	0.8754
AT1G52620			Pentatricopeptide repeat (PPR)...		Potri.001G139200 [exp]	6.48	0.8698
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	10.24	0.8910	Pt-SPY.2
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085500 [exp]	10.95	0.8663

Compare expression of checked genes

Potri.002G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.