Plant FIBer expression Database

Potri.002G183500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46900 559 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G109500
[exp]
928 / 0 AT2G46900 574 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036338
[exp]
687 / 0 AT2G46900 630 / 0.0 unknown protein
Lus10010275
[exp]
686 / 0 AT2G46900 635 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF04910 Tcf25 Transcriptional repressor TCF25
Representative CDS sequence
>Potri.002G183500.1 pacid=42777808 polypeptide=Potri.002G183500.1.p locus=Potri.002G183500 ID=Potri.002G183500.1.v4.1 annot-version=v4.1
ATGTCAGCTAGGTTACTGAAGAAATTCCTGAAAGAACAAGAACTACAGCAGCAACAGCATCATGTGGAGGATGAAGAAGAAGAAGAAGAAGAAGCAGCTG
AATCTCCTGATTCGGAAAATCGCCCTGCAATAAACCCATTTGACCTTCTCAATGATGATGACGTTGATCAGCTGCAGGAGGATGAGCCAGAAATTGCAGA
TGAAATGGTAGTGGGTAAAGATCACAAACAGGAACTGTCTGTGATGAAAAGCATGACGGGTGCCATTTCAACTTCCAATCAGAAATCAAAGAAGAAGAAG
AAAAAGAAATGCAAGGCTGGTTTGACTTCAATTACAAATAAAGTTGAAGAACCTTTGGATGATACATTAGATGCTTTATCCTTGGATGCTAATTCTTCAA
GACATAAGCTGGGCCCCACCAAAACCAAACCAGAAACATCAAAACTTTGTGCAGGATTTGTTAAACAATGTGCACCTCCCGCCTTGCAACTGGATCCCAA
ATGTTTGAATCCTGAGAATGAGTTACGGAGAATTTTTGGTTCTAAGGTGGTGAAATCATTTGAGAAAAGTAATCAAGACAGCAGTTCTAGACAGGTTCGT
GGCGGCAGACGTGGAGCCCATCATACTAGAAAGACAATTCTAGTCTCTCCATCAGAACATTGGCCTCGTTGGGATGGATCTTTATCCATGGAGTTTTTGG
AAACTAAGGACGGATACCATCATTTTAGATATGTTCACTCTTCTTACTATGATCAAGCACAGAGTGCATTTGAAGCTGCCAAAGCTATTCAAGATCTCAA
TGGCATAGCAAGCATTCTATTATACCAACCTTATCACCTAGATTCACTTATAACAATGGCAGACTATTTCAAATTTGTGGGTGAGCATCAAATGTCAGCT
GATGCTATTGCAAAGAGTTTATATGCCTTGGAATGTGCATGGCACCCCACGTTCACCCCCTTGCAGGCAAATTGCCAGTTGAAGATCAACCATGAAACAA
ACAAGCCAATGTTTACAACACTTTTCACTCACATGAAAAACTTGGACAGGCGTGGTTGTCATCGTTCTGCCCTTGAGGTTTGCAAACTTTTACTTTCATT
GGATTTAGATGATCCAATGGGGGCCATGTTCTGTGTTGATTACTTTGCTTTGAGGGCAGAAGTGTATGCGTGGTTGGAATGGTTTTCTGAAGACTATAAA
AGTGATAACTCCTTATGGTTGTTCCCAAACTTCTCATATTCTCTTGCCATTTGTCGGTTTTATCTTGAGTGTGAGGAACCATCAAAAGATGATGATACTA
GTGCTACAAAGTCTAGTTCAGCTGATTTGATGAAGCAGGCTTTGATGCTCCACCCGTCAGTCCTTAAGAAGTTAGTAGCCAAGGTACCTTTGAAAGATCA
GGCATGGACAAATATACTAAAGCATGCCTTTTTTCAATCAGAGAAAACAGGGTCTGCATCCTTGGATCATCTGATTAATATATATGTAGAGAGAAGTTAT
ATCATATGGAGGCTTCCAGACCTGCAAAAATTGCTTCGGAACAGTGCTTTACAAGTGATTGAAACTCTAGAACATAGTAGCAGTGATGCCAAGGATTGGG
CTTGTGTGAGAAAAGAGGCCTTTTCATCTGAGAACAATGAGTATGGCCATTTGCTGGTTTCAGACTTCTCTGATACAGTTCCAACACTTCCACCTGAGAA
CCTGCAAAACTTCATGGTTGATCCAAGGATGAGAGAGGCAGAGCAAAATGGGGGACAAATTGCCAACCCACTTGACGGTGGCCCTGCTCCACGCGATGTT
GCTAATCGAAATGCATTGGCAGTCTTGTTTGAATCTATGTTGCCATGGGTTAATTATGGGGGTGGAGGGGATGAAGGAGGCAATGAGGAGAACCAAGTTG
ATGGACATGAACAAGGCGACGATTGA
AA sequence
>Potri.002G183500.1 pacid=42777808 polypeptide=Potri.002G183500.1.p locus=Potri.002G183500 ID=Potri.002G183500.1.v4.1 annot-version=v4.1
MSARLLKKFLKEQELQQQQHHVEDEEEEEEEAAESPDSENRPAINPFDLLNDDDVDQLQEDEPEIADEMVVGKDHKQELSVMKSMTGAISTSNQKSKKKK
KKKCKAGLTSITNKVEEPLDDTLDALSLDANSSRHKLGPTKTKPETSKLCAGFVKQCAPPALQLDPKCLNPENELRRIFGSKVVKSFEKSNQDSSSRQVR
GGRRGAHHTRKTILVSPSEHWPRWDGSLSMEFLETKDGYHHFRYVHSSYYDQAQSAFEAAKAIQDLNGIASILLYQPYHLDSLITMADYFKFVGEHQMSA
DAIAKSLYALECAWHPTFTPLQANCQLKINHETNKPMFTTLFTHMKNLDRRGCHRSALEVCKLLLSLDLDDPMGAMFCVDYFALRAEVYAWLEWFSEDYK
SDNSLWLFPNFSYSLAICRFYLECEEPSKDDDTSATKSSSADLMKQALMLHPSVLKKLVAKVPLKDQAWTNILKHAFFQSEKTGSASLDHLINIYVERSY
IIWRLPDLQKLLRNSALQVIETLEHSSSDAKDWACVRKEAFSSENNEYGHLLVSDFSDTVPTLPPENLQNFMVDPRMREAEQNGGQIANPLDGGPAPRDV
ANRNALAVLFESMLPWVNYGGGGDEGGNEENQVDGHEQGDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46900 unknown protein Potri.002G183500
[exp]
0 1
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.001G171100
[exp]
1.73 0.9038
AT3G04470 Ankyrin repeat family protein ... Potri.013G047500
[exp]
2.82 0.8102
AT3G06270 Protein phosphatase 2C family ... Potri.010G028300
[exp]
2.82 0.8459
AT3G26000 Ribonuclease inhibitor (.1) Potri.001G337300
[exp]
7.48 0.8119
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.003G095000
[exp]
8.94 0.7972 Pt-ATHSFA1.1
AT1G21560 unknown protein Potri.002G077500
[exp]
9.38 0.7906
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Potri.001G109500
[exp]
11.61 0.7991
AT5G57940 ATCNGC5 cyclic nucleotide gated channe... Potri.018G106100
[exp]
12.36 0.7945 CNGC5.1
AT2G27110 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.... Potri.009G158400
[exp]
13.30 0.8386
AT4G31770 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHI... Potri.018G015300
[exp]
14.07 0.8202

Potri.002G183500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.