Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62000 404 / 2e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 360 / 1e-125 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26220 161 / 1e-48 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 159 / 1e-47 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67980 159 / 1e-47 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G67990 154 / 8e-46 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24735 148 / 3e-43 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136600 [exp] 162 / 9e-49 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.009G099800 [exp] 160 / 8e-48 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 155 / 4e-46 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G104400 [exp] 152 / 6e-45 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.018G070300 [exp] 149 / 8e-44 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036339 [exp] 403 / 7e-143 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 275 / 2e-92 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014074 [exp] 157 / 1e-46 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 156 / 2e-46 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 153 / 4e-45 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 153 / 4e-45 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 147 / 2e-41 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034584 [exp] 141 / 2e-40 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10021804 [exp] 97 / 2e-24 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10032698 [exp] 41 / 0.0003 ND 134 / 1e-40
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13578 [poplar] [flax] Methyltransf_24 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.002G183600.2 pacid=42777452 polypeptide=Potri.002G183600.2.p locus=Potri.002G183600 ID=Potri.002G183600.2.v4.1 annot-version=v4.1 ATGGCGAGCAACTCGGTGCTTTATCGGTGCTCTTTGGTATCATATCAATACACCAGTGCTGCCACTATTATCGTAGGGAGAAGAACAGTAGCAATTTCTG GAAATGGATTTAGGGCTTGTAAACCGATTCGTCTAGCCAGAAATTGTTGCTCCTACTCCTGCTCCTACCCCAACCCCAACGACTCCGCGTTTGTAGTTGC AAATGACGAAAAGTACGGCAACAAACAGAACATAAGTCTAACTCCTCGCCTTTATGACTACATCCTCTCCAACGTTAGAGAGCCTGAGATTTTAAGGCAA CTTCGAGAAGAGACTGCTTCTATGCGAGGTAGCCAGATGCAGGTATCTCCTGACCAGGCGCAACTGCTTGCCATGCTTGTCCAGATTCTTGGTGCGAAAC GCTGTATTGAACTTGGTGTTTACACCGGATATTCGTCGTTGGCTGTTGCTTTAGTACTGCCAGATTCTGCTTGTTTAGTTGCCTGTGAAAGAGATGCTAA GTCTCTAGAGGTTGCAAAAAAGTATTATGAGCTAGCTGGTGTTTCCCACAAGGTTGATGTGAAGCATGGAATGGCAGCGGATATCCTAAAATCATTGATT CTGAATGGTGAATCCTGCAGCTATGATTTTGCATTTGTTGATGCTGAGAAGAGAATGAATCAGGAGTATTTTGAATTGCTATTACAACTGGTTAGGGTTG ATGGTGTCATTGTCATTGACAATGTTCTTTGGCATGGCAAAGTTGCTGACCCGCTGGTAAATGATGCTAAGACGGTTAGCATCAGAAGTTTCAATAAAAA TATAATGGAGGATCCACGTGTCAGCATCAGTATGGTACCTATCGGGGATGGCATGACAATCTGCCGAAAGAGATGA
AA sequence Show only first row Show all	>Potri.002G183600.2 pacid=42777452 polypeptide=Potri.002G183600.2.p locus=Potri.002G183600 ID=Potri.002G183600.2.v4.1 annot-version=v4.1 MASNSVLYRCSLVSYQYTSAATIIVGRRTVAISGNGFRACKPIRLARNCCSYSCSYPNPNDSAFVVANDEKYGNKQNISLTPRLYDYILSNVREPEILRQ LREETASMRGSQMQVSPDQAQLLAMLVQILGAKRCIELGVYTGYSSLAVALVLPDSACLVACERDAKSLEVAKKYYELAGVSHKVDVKHGMAADILKSLI LNGESCSYDFAFVDAEKRMNQEYFELLLQLVRVDGVIVIDNVLWHGKVADPLVNDAKTVSIRSFNKNIMEDPRVSISMVPIGDGMTICRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62000			S-adenosyl-L-methionine-depend...		Potri.002G183600 [exp]	0	1
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.017G044700 [exp]	3.46	0.7243
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Potri.009G027600 [exp]	9.32	0.6362	MBD906
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	11.61	0.7133
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	13.00	0.6925
					Potri.003G137900 [exp]	15.49	0.7382
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.003G130301 [exp]	19.67	0.7240
AT1G43245			SET domain-containing protein ...		Potri.005G193500 [exp]	25.25	0.6978	SDG954
AT1G11120			unknown protein		Potri.019G103800 [exp]	25.84	0.7150
AT1G69330			RING/U-box superfamily protein...		Potri.010G161100 [exp]	27.49	0.6653
AT1G43245			SET domain-containing protein ...		Potri.005G193701 [exp]	27.83	0.6740

Compare expression of checked genes

Potri.002G183600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.