Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 49 / 2e-06 FIB fibrillin (.1) AT4G22240 41 / 0.0006 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G003200 [exp] 47 / 5e-06 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036340 [exp] 304 / 3e-104 AT2G46910 325 / 6e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10010277 [exp] 251 / 5e-83 AT2G46910 266 / 5e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10000058 [exp] 109 / 2e-30 AT2G46910 112 / 8e-32 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 49 / 3e-06 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 45 / 3e-05 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.002G183700.2 pacid=42777499 polypeptide=Potri.002G183700.2.p locus=Potri.002G183700 ID=Potri.002G183700.2.v4.1 annot-version=v4.1 ATGAACATGGCTTTTGCTACTTCGTTGTATCCTGCAACTGGAAAGAGACCCATTTTCAAAATTATTAACCCTTTTACTTGTAACGCTGCCACTAGAAGAA ATCTCACCGTTCGAAGAAACTTTTCATGTTCAGCAACTGTAGCTACTGATATCACTGCTCGGGTATCTGAATTTGAGATTGAGAACAAAAAAAATGATTT GTTGAGATTGGTCCAAGACACGCAACGAGGGCTTGTTACCACTCCTGATCAACGCTCTTCTATTGAGGAGGCTCTAGTGAGCTTGGAAGGATACAACATG GGTGAGTCAGTTGACCTGGTGCGGCTGGATGGCACATGGCGCCTACAGAACACCTCTGCCCCTGATGTTCTTGTTCTCTTTGAATCTGCTGCAAGGTTTC CCTTCTTTCAGGTTGGGCAGATCTACCAGAAATTTGAATGTAGAGATCAGTCTGATGGTGGTGTCATTCGCAATGTTGTTCAATGGAGTATCCCAACATT GTTAGAGGAACAAGAAGGTGCTACTCTCCTTGTTTCCGCAAAATTTAATGTTGTTTCTGCACGCAACATCTATCTTCAGTTTGAAGAGATAAGCATTCAA AACATTAGAATCAGTGAAGAGTTGCAAGCTTTAATAGCTCCGGCACTGCTACCTCGTTCATTTCTTAGTCTACAGATCCTACAGTTTATCCGTACTTTCA AAGCTCATGTTCCTGTAAGAAACCCAGGAGACCCGGGGAGGCGATCAGTGGGAGGTCTATATTACCTCTCCTATCTGGATCGCAATATGCTTTTGGGGCG TGCTGTAGGAGGTGGTGGAGTTTTTGTCTTTACCAGAGCTCAGCCTATTGACTTGTGA
AA sequence Show only first row Show all	>Potri.002G183700.2 pacid=42777499 polypeptide=Potri.002G183700.2.p locus=Potri.002G183700 ID=Potri.002G183700.2.v4.1 annot-version=v4.1 MNMAFATSLYPATGKRPIFKIINPFTCNAATRRNLTVRRNFSCSATVATDITARVSEFEIENKKNDLLRLVQDTQRGLVTTPDQRSSIEEALVSLEGYNM GESVDLVRLDGTWRLQNTSAPDVLVLFESAARFPFFQVGQIYQKFECRDQSDGGVIRNVVQWSIPTLLEEQEGATLLVSAKFNVVSARNIYLQFEEISIQ NIRISEELQALIAPALLPRSFLSLQILQFIRTFKAHVPVRNPGDPGRRSVGGLYYLSYLDRNMLLGRAVGGGGVFVFTRAQPIDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46910			Plastid-lipid associated prote...		Potri.002G183700 [exp]	0	1
AT1G31160		HINT2 ,HINT 2	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Potri.015G124700 [exp]	2.82	0.9027
AT1G32070		ATNSI	nuclear shuttle interacting (....		Potri.016G140000 [exp]	6.00	0.9055
AT2G45270		GCP1	glycoprotease 1 (.1)		Potri.014G067800 [exp]	8.06	0.9305
AT5G04440			Protein of unknown function (D...		Potri.008G030300 [exp]	8.48	0.9172
AT2G23390			unknown protein		Potri.004G228500 [exp]	11.13	0.9263
AT3G63510			FMN-linked oxidoreductases sup...		Potri.001G264900 [exp]	20.92	0.9039
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	21.07	0.8941
AT4G01995			unknown protein		Potri.002G194500 [exp]	24.24	0.8797
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	24.49	0.8676
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	29.94	0.8746

Compare expression of checked genes

Potri.002G183700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.