Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46915 745 / 0 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010092 [exp] 860 / 0 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10007214 [exp] 859 / 0 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 86 / 2e-17 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 86 / 2e-17 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012581 [exp] 84 / 1e-16 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 77 / 2e-14 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [poplar] [flax] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Potri.002G183900.3 pacid=42779960 polypeptide=Potri.002G183900.3.p locus=Potri.002G183900 ID=Potri.002G183900.3.v4.1 annot-version=v4.1 ATGTTATCTCTTCCTAATTTCACCGGTGGCACCACCGCTCTGTCATCTCCACGTTCGTTGGCGCCACCTCGCTCTCGCCATTCGGTGTTTAAGAAGGTTA CTGTTCCCTCCAGATATCCTTGCTGCTGCTCTTCTTTGAGACTTCAGGAATTATCAATTCAGGAGCCTTTGGAAGAATCGAGAGAGATCTTTAGATTAAA AACACAGAATGATGAAAATGATCCTGTTCCAAGAGACCAAGAAGAAGAGAGAGGGATTTCTAAAATACAAGTGAGCAGGGAGAAATACATACCCGTTTCC AAGGCAGAGCTTTTGGATGCTGTTTTATTGAAGTTATTCGACTCTCAAGATGATGATGCTAATCAGTTCCTTCTTCTTTCTTCGTGTTTGGACTCTATTC TACACGCAGAACACAAAAGTATTTTAGAGGAAATGAGGATAGATTACTCACTTACTCATTCCATTGATGATGAAGCGACAAGTGATGAGAAATCAGGTAG TTCAGATGGAAGAGAGGAGGCTGACAGGGAAAATCCTGGCTCAGTTAGCAATAAGATCAATGGAAACGGGAGCGTGGGGAAATTAGAAGAGGAGACTGAA GTTGATAGACCATTGCATTTTGATTATGGTCTAGACTTGAGAAACTTTTTAAGCTCTCCAGTAACAAATGACAAGAGATGTTCTAATGGAGAGTGCAGAC TTGCTGTTGCCACCCGCTTCCAGCGTTCTTTTATGCAACTTCTTAATAATGCTCAGTTTCAAGAACTATCAGCTGGGGATTTGATGCTGACATCTGCCTT GAACTCAGATTACCTCCTTACTTTGCCAGTATACGTGGACTGGAAGAAAGCATCTGAATCCAATGCAATAATCTTCAGGAGGGGCTATGCAACTGAGAGG CAGAAAGGTCTGCTAATTGTTGAAAAGTTGGATTACGTTCAGTCCAGGCTTCTGCAGGGTATTTTCTTCCTTATATCAAAACCAGTGGGGAAAGTTGGCA TATGGATAAAAGAGGCTATTAGAAATGCTTTTGAGAGCCATGAAGTACAAGATTGGATTAAGAAAATGACACCTTGGCTTGAGCAACTGTCACTTTTTCA GCAATCGTATTTTAGTAATGAACAAGCTTCTGATAATCCACCGGAGATTGACCAACTATCAGATACTGAACTTCCAATTTGGCTAGCAGCACAGAGGGCA GTAAGTCGGTATGAAGGTTTTCTGTCACCTGTTGGACCCCGTGGAAGGCTCTTCAGGAAGTTACTCACATGGATTGGATTTCTACCTCCTTTGCCGGAAA AGCCATTTGAACTTGACAGTTATAGTAATGCTTCTGAACCTCGTTTAAGGCCGATTTTCTTATCAAGGATATCACTTAGTGATATATGGAGACCTGCTAC AAGAAAATACTGCAGAAACAATATTTGGAAAATGCTAAAGACTTCCTTTTCCATACTACTTTCTCAGTCAGTCCTCCAGGAAGCTGCATTTCAAGAATTA ATTTTGCTTTATACCACGGAAACAAGTGATAGCAATCCTAAAGATAAAGCTGACGTTCCAGCATTGCAGCTCAAGATCTATGAGAGAATTCCCATTCCCG ATTTACCGGTCGTTTTTCCACACAAAAAGCTGTCTTTCCGTATCATTGACACGGTACGCTTGGATGCAGCTACGATATTGGGACTTTTGGCATACTTCAT AAACTACAAATTTGAGATCTTATCTTCCCCATCGGCAATATTTCTTGATGTAGTTGCTATCACTGCTCTGATAATATATGTAACTCGTGTGGCTTTGGGT TACAAACAGACATGGGATAGATATCAACTGCTGGTTAACAAAACGCTTTATGAGAAAACACTGGCAAGTGGCTTTGGCTCAGTTCATTTTCTTCTCGATG CTTCTGAACAGCAGCAATATAAGGAAGCCATATTGGCATACGCGATCCTACTTAAAGAAACAAATGGACAGGTCGCTTGTCACCGAAGTGTTGGAGATGA ATGTGAGAGATTTCTGTACGATGTGTTTAAAGTAAAGGTTGAAATGCCAGTTGAAGAAGCAATGAATACTTTGATTAGGCTAGGCCTTGTTATAGAAACA CCCATTGATGGAAGAGGAACCAGGTTGCAGGCTGTTCCTTGTGAAAAGGCGCATGAGATTCTTAAAGAACGCTGGAATAGTTTGCTTTGTTAG
AA sequence Show only first row Show all	>Potri.002G183900.3 pacid=42779960 polypeptide=Potri.002G183900.3.p locus=Potri.002G183900 ID=Potri.002G183900.3.v4.1 annot-version=v4.1 MLSLPNFTGGTTALSSPRSLAPPRSRHSVFKKVTVPSRYPCCCSSLRLQELSIQEPLEESREIFRLKTQNDENDPVPRDQEEERGISKIQVSREKYIPVS KAELLDAVLLKLFDSQDDDANQFLLLSSCLDSILHAEHKSILEEMRIDYSLTHSIDDEATSDEKSGSSDGREEADRENPGSVSNKINGNGSVGKLEEETE VDRPLHFDYGLDLRNFLSSPVTNDKRCSNGECRLAVATRFQRSFMQLLNNAQFQELSAGDLMLTSALNSDYLLTLPVYVDWKKASESNAIIFRRGYATER QKGLLIVEKLDYVQSRLLQGIFFLISKPVGKVGIWIKEAIRNAFESHEVQDWIKKMTPWLEQLSLFQQSYFSNEQASDNPPEIDQLSDTELPIWLAAQRA VSRYEGFLSPVGPRGRLFRKLLTWIGFLPPLPEKPFELDSYSNASEPRLRPIFLSRISLSDIWRPATRKYCRNNIWKMLKTSFSILLSQSVLQEAAFQEL ILLYTTETSDSNPKDKADVPALQLKIYERIPIPDLPVVFPHKKLSFRIIDTVRLDAATILGLLAYFINYKFEILSSPSAIFLDVVAITALIIYVTRVALG YKQTWDRYQLLVNKTLYEKTLASGFGSVHFLLDASEQQQYKEAILAYAILLKETNGQVACHRSVGDECERFLYDVFKVKVEMPVEEAMNTLIRLGLVIET PIDGRGTRLQAVPCEKAHEILKERWNSLLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	1.41	0.9595
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	1.73	0.9630
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	7.74	0.9594
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.005G083200 [exp]	8.66	0.9530
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.010G170300 [exp]	11.74	0.9393
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	12.16	0.9550	ANTR2.2
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	15.09	0.9490
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.009G029100 [exp]	20.00	0.9523	ALB3.1
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	20.00	0.9333
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	20.49	0.9527

Compare expression of checked genes

Potri.002G183900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.