Plant FIBer expression Database

Potri.002G184000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02290 232 / 1e-69 unknown protein
AT3G45830 149 / 2e-37 unknown protein
AT5G13950 68 / 1e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G109600
[exp]
968 / 0 AT1G02290 229 / 3e-68 unknown protein
Potri.001G233800
[exp]
154 / 6e-39 AT3G45830 1075 / 0.0 unknown protein
Potri.009G026100
[exp]
151 / 4e-38 AT3G45830 1059 / 0.0 unknown protein
Potri.014G144100
[exp]
62 / 7e-10 AT5G13950 406 / 4e-127 unknown protein
Potri.002G237800
[exp]
62 / 1e-09 AT5G13950 556 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028606
[exp]
355 / 4e-116 AT1G02290 206 / 7e-61 unknown protein
Lus10018907
[exp]
352 / 9e-115 AT1G02290 210 / 3e-62 unknown protein
Lus10018121
[exp]
142 / 3e-35 AT3G45830 803 / 0.0 unknown protein
Lus10036145
[exp]
141 / 1e-34 AT3G45830 1034 / 0.0 unknown protein
Lus10031980
[exp]
62 / 2e-09 AT5G13950 438 / 2e-138 unknown protein
Lus10035121
[exp]
53 / 5e-07 AT5G13950 292 / 1e-85 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G184000.1 pacid=42777752 polypeptide=Potri.002G184000.1.p locus=Potri.002G184000 ID=Potri.002G184000.1.v4.1 annot-version=v4.1
ATGGGCATACAGAAGATTTGCCATCGGAGTTCAAGTTCTGATAAAGTTTCCTGCTCCTTCAGTGGTGAAGTCAAGCAGATGAGAGAAAACCCAGTTTTGG
GTGCAGACTCAGGGAATGATTCAGATGATTGTGAACTTGCTGAATTGAACTGTGAGCTTGGTATGGTGGAAGGTCAGCGTTGCAGCATACCATATGAGCT
CTATGATCTTCCAGATTTGAGGGAAATATTATCTCTAGACACATGGAATTTGTGTTTAACAGAGGAAGAAAGGTTCAACCTGTCAGCTTACCTTCCAGAT
ATGGACCACGAGACATTTTGCCTGACTATGAAGGAGCTTTTTGATGGTACTGAACTATATTTTGGGAATCCGCTAGATAAATTTTTGAAAAGATTGAAAG
CTGGATTCTACCCTCCAAAGGTGGCTTGCTTCAGAGAAGGTTTGCAGTTTCTACAAAGGAAGCAGCATTATCATTCTCTGAGAGCTTACCATGACAGGAT
GATACAAACGTTAATAAACATGAGAATGTTATGGGATCAGTATGGAATGAGTCCTGGAATTGAGGAAAAGATTTCTATGTGGAAAAACAGGAGAAAACAA
AAGAGCGTCAATGTGCTTGATCTTAATGAATCTCCCAAGGATGATCATCTATTAAATGAGGTGGACAACTTGGAAACAAAGGTGATGAAGCTAGTGGAAA
CCGAGGGTTCAGCAAAAGAAAGACCACCCTTTCTGTGTACCAACAGGACAAAAATTGTAGCTCCATACTGCAGACCAAAGGGAGTTTTAAAGATGAAGGC
ATCTGGAAAAGATTCATTCCGTAATCACAATTCAAAGATGGTTGTGGCTGACTCCTCGGGACAACGTCGATCATTGCCCAGGGGAGTGTTGAAAATAGTA
CCTAAAGCTCCTTCACTTCACCTGGAACAATCAGACATTGTGCCAAGAGGAGTGCAATCAAACTTTCCAGCCAGGACTCATGGCATACGGGATTTTAAAT
TTTCTCCTTTGCCAGCATCTGTATGCTTTCAGAATGCAGGTAGCCTGCATGAATATCCGTTTCTAAGGAAAAAGGTTGATGGTGACAGAGTTCATTCAAC
TCTGGACCAACCTCAGTTTCTAATAGATCCGCAGGAAATTGTTAGAGTAACCCAAAATCTCCCTGAAAGCTCTACAAGAAATGTGAAACCAGAATCGCTT
CCAACTTTAGATGAAAATTCTGTTGTGGTAAAACACAAATTATTTGGAGTTGATATGGGAAGGTTTCCGAATAAGGAATGCAAGTCATCCTTGGATACAG
GGGGTGCAAGGCCACATACCTTTGGTGGTGAAAATCTGGGGGCAAATGTGGACAGAGAATCTAATGGCTCTTTCCTGAAATCCTTGGAATCATTCCCATT
TCGTATCCAATATCAAGGAGGGGAGCAGTGCATGGCACCATTAAAAGAAGAGCATCTCACAATCTATCCAAGAATTCCAGAAGTGGTTCCTGCAATTTCA
GATGTTGGCAATGATAAGCAAGAAACGTTAATGGATTCTTCTTCACACCAAAAGAATGGTGAGAATGATGTCAGTGTCAGAAAATCAGGGAAGCTATCGA
GTAAATCCAGTGTCTCAGTGGCATTTAAGGATCAAAAGTTACTGCCTTTGACGTACAAGCGAAGGAAAGTTCTAGCTAAGGCCAACTCATTAAACTTTGG
TAAGTCACTAACAGCAGATGCTAATCTGAAGTCTGCAATTACAAAAGAATCAGATCAAGATTTTAGGGAGGGTGTGAAAACTGTGAAGATAAAATTAATG
GGATTGAAAGATATGCCCTTGAACAGGGAACCTTGA
AA sequence
>Potri.002G184000.1 pacid=42777752 polypeptide=Potri.002G184000.1.p locus=Potri.002G184000 ID=Potri.002G184000.1.v4.1 annot-version=v4.1
MGIQKICHRSSSSDKVSCSFSGEVKQMRENPVLGADSGNDSDDCELAELNCELGMVEGQRCSIPYELYDLPDLREILSLDTWNLCLTEEERFNLSAYLPD
MDHETFCLTMKELFDGTELYFGNPLDKFLKRLKAGFYPPKVACFREGLQFLQRKQHYHSLRAYHDRMIQTLINMRMLWDQYGMSPGIEEKISMWKNRRKQ
KSVNVLDLNESPKDDHLLNEVDNLETKVMKLVETEGSAKERPPFLCTNRTKIVAPYCRPKGVLKMKASGKDSFRNHNSKMVVADSSGQRRSLPRGVLKIV
PKAPSLHLEQSDIVPRGVQSNFPARTHGIRDFKFSPLPASVCFQNAGSLHEYPFLRKKVDGDRVHSTLDQPQFLIDPQEIVRVTQNLPESSTRNVKPESL
PTLDENSVVVKHKLFGVDMGRFPNKECKSSLDTGGARPHTFGGENLGANVDRESNGSFLKSLESFPFRIQYQGGEQCMAPLKEEHLTIYPRIPEVVPAIS
DVGNDKQETLMDSSSHQKNGENDVSVRKSGKLSSKSSVSVAFKDQKLLPLTYKRRKVLAKANSLNFGKSLTADANLKSAITKESDQDFREGVKTVKIKLM
GLKDMPLNREP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02290 unknown protein Potri.002G184000
[exp]
0 1
AT1G78600 CO BBX22, DBB3, ST... SALT TOLERANCE HOMOLOG 3, DOUB... Potri.001G384000
[exp]
6.48 0.7507
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.001G351532
[exp]
6.55 0.7913
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.014G019600
[exp]
8.60 0.7762
AT4G15840 BTB/POZ domain-containing prot... Potri.010G014000
[exp]
12.96 0.7610
AT5G54730 ATATG18F ARABIDOPSIS THALIANA HOMOLOG O... Potri.001G417000
[exp]
14.66 0.7117
AT1G69360 Plant protein of unknown funct... Potri.017G088900
[exp]
17.88 0.7261
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Potri.014G166300
[exp]
26.26 0.7739
AT5G04260 WCRKC2 WCRKC thioredoxin 2 (.1) Potri.010G225701
[exp]
32.49 0.7536
AT3G01820 P-loop containing nucleoside t... Potri.015G093200
[exp]
32.90 0.7436
AT1G10240 FAR1_related FRS11 FAR1-related sequence 11 (.1) Potri.004G227600
[exp]
42.32 0.7550

Potri.002G184000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.