Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28200 219 / 5e-72 FIP1 FH interacting protein 1 (.1) AT2G22475 212 / 8e-69 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G01600 192 / 1e-61 GRAM domain family protein (.1.2) AT5G13200 162 / 1e-49 GRAM domain family protein (.1) AT4G40100 147 / 2e-44 GRAM domain family protein (.1) AT5G23370 136 / 4e-40 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 135 / 9e-40 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 132 / 7e-38 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 129 / 2e-37 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109700 [exp] 398 / 3e-143 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.002G102800 [exp] 213 / 4e-69 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.005G159100 [exp] 211 / 2e-68 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.003G165400 [exp] 181 / 8e-57 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165700 [exp] 174 / 6e-54 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.003G165500 [exp] 171 / 7e-53 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 169 / 5e-52 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.001G323300 [exp] 162 / 2e-49 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.007G075200 [exp] 147 / 4e-44 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010279 [exp] 240 / 2e-80 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 220 / 4e-72 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 216 / 1e-70 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10025728 [exp] 217 / 3e-70 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10035933 [exp] 184 / 7e-57 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 168 / 9e-52 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 167 / 2e-51 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10013445 [exp] 144 / 5e-43 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 144 / 8e-43 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10040999 [exp] 138 / 1e-40 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Potri.002G184100.1 pacid=42778400 polypeptide=Potri.002G184100.1.p locus=Potri.002G184100 ID=Potri.002G184100.1.v4.1 annot-version=v4.1 ATGGACTACAGTAACAACAATCCTCACCTCCAGTTCGCGCCTGTTCCTCCGGCTACTACTAATGGATATGGGACAAATGGCAACAGATCGATGGGGAAGA TACGTGATGCTTTGAATCGGTGTGGGAAAAGGGTTGAGCTTGCCACTAGGAAAGCAGAGGTTTATGCTGATAATATCTGGCATCACTTCAAGGTTAGTCC TAGTCTAGCCGATGCAGCAATGGCAAGGATTGCTCAAGGGACAAAGGTACTTGCTGAAGGAGGGCATGATAAGGTATTCCAGCAGACATTTGAGGTCTTG CCTGGAGAGAAGCTCTTGAATGCATATGCTTGCTATATATCGACTTCAACTGGACCTGTGATCGGGACACTTTATGTATCCTCCAAAAAGGTGGCCTTTT GCAGCGAGTATCCCTTCTGTTATTATTCCTCCACAGGACAGCAGCAATGGATGTATTACAAGGTTGTGGTGCAGCTTGATCGATTGAGAGCAGTGAATCC TTCTTCAAACAGAGCGAACCATTCCGAAAAGTACATCCAGATTGTAACGAAGGATGGTCAGGAGTTCTGGTTCATGGGGTTCATATCATATGACAAGGCA CTGAAGCAATTATGCGAGGCTTGA
AA sequence Show only first row Show all	>Potri.002G184100.1 pacid=42778400 polypeptide=Potri.002G184100.1.p locus=Potri.002G184100 ID=Potri.002G184100.1.v4.1 annot-version=v4.1 MDYSNNNPHLQFAPVPPATTNGYGTNGNRSMGKIRDALNRCGKRVELATRKAEVYADNIWHHFKVSPSLADAAMARIAQGTKVLAEGGHDKVFQQTFEVL PGEKLLNAYACYISTSTGPVIGTLYVSSKKVAFCSEYPFCYYSSTGQQQWMYYKVVVQLDRLRAVNPSSNRANHSEKYIQIVTKDGQEFWFMGFISYDKA LKQLCEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.002G175200 [exp]	3.16	0.8700	Pt-CYP78.1
AT5G67220			FMN-linked oxidoreductases sup...		Potri.007G047300 [exp]	4.24	0.8172
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.013G058300 [exp]	5.29	0.8577	Pt-GDH1.2
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	6.92	0.8684
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	7.74	0.8588	Pt-MYR1.2
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.003G035200 [exp]	10.24	0.8160
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	11.48	0.8342	Pt-CYTGS.5
					Potri.017G018901 [exp]	13.26	0.8457
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	19.05	0.8370
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	24.39	0.8510

Compare expression of checked genes

Potri.002G184100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.