Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02305 500 / 6e-179 Cysteine proteinases superfamily protein (.1) AT4G01610 498 / 3e-178 Cysteine proteinases superfamily protein (.1.2) AT1G02300 468 / 4e-166 Cysteine proteinases superfamily protein (.1) AT3G45310 100 / 1e-23 Cysteine proteinases superfamily protein (.1.2) AT3G43960 94 / 3e-21 Cysteine proteinases superfamily protein (.1) AT5G60360 93 / 6e-21 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19400 87 / 9e-19 Cysteine proteinases superfamily protein (.1.2) AT1G29080 86 / 9e-19 Papain family cysteine protease (.1) AT3G49340 82 / 3e-17 Cysteine proteinases superfamily protein (.1) AT2G34080 82 / 4e-17 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109801 [exp] 630 / 0 AT1G02305 515 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.002G184300 [exp] 577 / 0 AT1G02305 550 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.006G141700 [exp] 98 / 8e-23 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.004G055900 [exp] 97 / 2e-22 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 95 / 6e-22 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 95 / 6e-22 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 94 / 2e-21 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 92 / 6e-21 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 92 / 9e-21 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007212 [exp] 525 / 0 AT1G02305 532 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10010091 [exp] 510 / 5e-178 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10042693 [exp] 101 / 6e-24 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10029658 [exp] 99 / 3e-23 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10042691 [exp] 95 / 2e-22 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10033428 [exp] 93 / 8e-21 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10029649 [exp] 91 / 4e-20 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10002184 [exp] 85 / 3e-18 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10015286 [exp] 82 / 3e-17 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10002199 [exp] 82 / 3e-17 AT5G45890 361 / 2e-124 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08127 [poplar] [flax] Propeptide_C1 Peptidase family C1 propeptide
Representative CDS sequence Show only first row Show all	>Potri.002G184201.2 pacid=42777393 polypeptide=Potri.002G184201.2.p locus=Potri.002G184201 ID=Potri.002G184201.2.v4.1 annot-version=v4.1 ATGGCAAGTCCTCTGTATCTTGGCACTCTCTTCTTACTCGTCGCTGCTCTCTTTACCTTCCGCTCTCAGGTTATTGCGGTGGAACCAGTTTCCAAGCTCA AACTCAATTCTAGGATCCTTCAGGATTCAATAGTTCAAAAGGTCAATGAAAATCCCAATGCTGGATGGGAAGCTACCATGAACCCTCAATTTTCCAATTA CTCTGTTGGGGAATTCAAGTACCTTCTTGGAGTCAAACCAACACCTGGAAAGGAACTAAGAGGTGTTCCTCTAGTAAGGCATCCAAAATCGATGAAATTA CCAAAAGAATTTGATGCAAGAACCGCTTGGCCACATTGTAGCACCATTGGAAGAATTCTTGATCAGGGTCACTGTGGATCCTGTTGGGCATTTGGTGCTG TTGAATCGCTATCAGATCGTTTTTGCATCCATTATGGCATGAACCTCTCTCTATCCGTCAATGACCTCTTAGCTTGCTGTGGCTGGATGTGCGGTGATGG TTGTGATGGGGGTTATCCAATTGATGCATGGAGATACTTTGTCCAATCTGGTGTTGTCACTGAGGAGTGTGATCCATACTTTGATGATATTGGCTGTTCT CACCCTGGTTGCGAGCCAGGATTTCCTACTCCAAAGTGTGAAAGAAAATGTGCCGATAAGAACAAGCTCTGGGCAGAGTCCAAGCACTTCAGTGTTAATG CTTATAGAATTGATTCTGATCCCCACAGCATCATGGCTGAAGTTTCCATGAACGGACCTGTAGAGGTGGCCTTCACTGTTTATGAGGATTTTGCTCATTA TAAATCAGGAGTTTACAAGCACATAACAGGTGATGTCATGGGAGGCCATGCTGTTAAGCTTATCGGGTGGGGGACTTCTGATGACGGGGAGGATTATTGG CTTCTTGCTAACCAGTGGAATAGAGGCTGGGGTGATGATGGCTACTTTAAAATCAGAAGAGGAACAAATGAGTGTGGTATTGAAGAGGATGTTGTTGCTG GTTTGCCTTCAACCAGGAACCTCGTCAGAGAAGTTGCCAAGATCGATGCCCATGAGCATGCCTCGGCGTGA
AA sequence Show only first row Show all	>Potri.002G184201.2 pacid=42777393 polypeptide=Potri.002G184201.2.p locus=Potri.002G184201 ID=Potri.002G184201.2.v4.1 annot-version=v4.1 MASPLYLGTLFLLVAALFTFRSQVIAVEPVSKLKLNSRILQDSIVQKVNENPNAGWEATMNPQFSNYSVGEFKYLLGVKPTPGKELRGVPLVRHPKSMKL PKEFDARTAWPHCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHYGMNLSLSVNDLLACCGWMCGDGCDGGYPIDAWRYFVQSGVVTEECDPYFDDIGCS HPGCEPGFPTPKCERKCADKNKLWAESKHFSVNAYRIDSDPHSIMAEVSMNGPVEVAFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYW LLANQWNRGWGDDGYFKIRRGTNECGIEEDVVAGLPSTRNLVREVAKIDAHEHASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	1.41	0.9630
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	1.41	0.9577
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	1.73	0.9575
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	2.64	0.9423	RD21.1
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	2.82	0.9566
AT5G04250			Cysteine proteinases superfami...		Potri.008G036900 [exp]	3.00	0.9399
AT5G43260			chaperone protein dnaJ-related...		Potri.001G056601 [exp]	7.34	0.9289
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.003G058900 [exp]	7.93	0.9267	AATP1.2
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022500 [exp]	8.94	0.9380
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.010G236100 [exp]	9.38	0.9401

Compare expression of checked genes

Potri.002G184201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.