Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62010 1966 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109900 [exp] 2348 / 0 AT3G62010 2006 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038011 [exp] 2104 / 0 AT3G62010 1976 / 0.0 unknown protein Lus10009251 [exp] 2090 / 0 AT3G62010 1969 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF14566 [poplar] [flax] PTPlike_phytase Inositol hexakisphosphate
Representative CDS sequence Show only first row Show all	>Potri.002G184400.1 pacid=42778419 polypeptide=Potri.002G184400.1.p locus=Potri.002G184400 ID=Potri.002G184400.1.v4.1 annot-version=v4.1 ATGTCGATGGCGGTGGTACAAAAAGAACCAGAGAAGGTGATGAAACTTAGAGGTGGATCAGTGCTGGGAAAGAAGACCATTCTTAAGAGCGACCATTTCC CTGGCTGTCAAAATAAGCGCTTAACTCCTCAAATCGACGGCGCTCCCAATTACCGTCAGGCGGAATCGTTACCTGTTCACGGTGTTGCGATTCCAACAAT AGAAGGATGTCGTAATGTTATTAAGCACATAAGAGGTCGGAAAGATGGGAAGCAAGCACAAGTTTTATGGTTTAACCTTCGTGAAGAACCGTTGGTGTAC ATTAACGGACGTCCCTTTGTCTTGCGTGATGTGGAGAGGCCTTTCTCCAATCTTGAATATACGGGAATAAACAGGTCCAGGGTTGAAGAAATGGAAGCTC GGTTGAAAGAGGATATCCTGATGGAAGCTGCAAGATATGGAAATAAGATACATGTTACTGATGAACTGCCAGATGGTCAGATGGTGGACCAATGGGAACC AGTCTCATGTGATTCTGTGAAGACACCAGTAGAGGTGTACGAGGATTTGCAAGTAGAAGGACATCTGTATGATTATGAACGAGTTCCTATAACAGATGAA AAATCACCAGAGGAGCAGGATTTTGATATCTTAGTTGATAGAATTTATCAGACGGACTTGAATACAGATATAATATTTAACTGTCAAATGGGGCGTGGAA GGACTACAACTGGGATGGTTATAACAACTTTGGTATACCTCAATCGGATTGGAGACTCTGGCATTCAGCGAACAAATTCAGTGGGGAGAATTTTTGAATT TGGTTTGAATGTCAATGAAAATTTGCCAAACTCAGAGGAGGCACTTCTCAGAGGAGAATATGCAGTCATAAGAAGTTTGATCCGGGTTTTGGAGGGTGGT GTTGAAGGGAAAAAACAAGTTGATAAAGTCATTGACAAGTGTGCCTCCATGCAGAACTTACGTGAAGCAATTGCCAATTATCGCAATAGTATTCTTCGTC AATCTGATGAGATGAAGCGAGAGGCATCACTTTCATTTTTTGTGGAATACTTGGAAAGATATTACTCCCTCATATGTTTTGCTGTGTATATACACTCTGA GAGGGATGCTCTCCGTTCTAGTTCTTTTGGTCATAGCAGTTTTGCAGACTGGATGCGAGCCCGGCCAGAACTTTACAGCATTATTCGTAGGTTGCTCAGG AGAAACCCAATGGGTGCTCTTGGATATGCGAGTCCTAAGCCATCTCCAATGAGGATTGCTGAATCTGCTGATGGCCGACCTCATGAGATGGGTGTAGTTG CAGCCTTGAGAAATGGGGAGGTTCTTGGAAGTCAGACTGTTTTAAAAAGTGACCACTGTCCTGGCTGTCAAAACCCTAGTTTACCAGAGAGAGTGGATGG TGCACCTAATTTCAGAGAAGTTCCTGGTTTTCCAGTTTATGGAGTAGCAAATCCTACAATTGATGGTATTCTTTCTGTCATTCAGAGGATTGGCAGCTCT AAAGGTGGTTGCCCAGTTTTTTGGCATAATATGAGAGAAGAACCTGTTATCTACATAAATGGAGAGCCATTTGTGCTCCGTGAGGTTGAAAGACCATTTA AAAACATGCTGGAATACACGGGAATTGGTCGTGAGAGAGTGGAGAGGATGGAGGCTCGACTGAAAGAAGATATCTTGCGAGAAGCTGAACGCTATGGAGG TGCTATAATGGTCATTCATGAAACGGATGATGGTCAAATCTTTGATGCCTGGGAGCATGTAAATTCTGATTCTATTAAGACCCCACTTGAGGTGTTTAAA TGCTTAGACACTGATGGTTTTCCCATTAAGTATGCCCGTGTTCCAATCACTGATGGTAAAGCTCCTAAAAGTTCTGACTTTGACACATTGGCGATGAATA TTGCTTCTGCTTCCAAGGATACTGCTTTCGTTTTCAATTGCCAGATGGGAAGGGGAAGGACTACGACTGGCACTGTAATTGCTTGCCTTCTGAAACTTAG AATAGATTATGGGAGACCAATTAGAGTCTTAGCTGATGATATGAACCATGAAGAGGTGGAAAGTGGAAGCTCAAGCGGTGAAGAAACTGGAGGTGACACT GCTGCAACCACCTCCGACATTGGCAGTGTAAAAACTGATATGGAACAAGGTCGTGCTTTTGGCATTGATGATATCCTGCTGCTGTGGAAGATAACAAGAT TATTTGATAATGGTATGGAATGCCGAGAGGCCTTAGATGCTATTATTGATAGATGTTCTGCTCTGCAGAACATACGCCAAGCTGTTCTGCAATACAGGAA GGTGGTCAATCAACAACATGTTGAGCCAAGAGTCAGGAGAGTGGCATTGAGCCGTGGTGCTGAATACTTGGAGAGGTACTTCCGTTTAATTGCCTTTGCA GCATATCTAGGAAGTGAAGCATTTGATGGGTTTTGCGGACAAGGAGAATCAAGGATGACATTTAAGAGTTGGTTGCATCAAAGACCTGAAGTCCAAGCAA TAAAATGGAGCATTCGATTGAGGCCAGGCCGTTTTTTCACTGTCCCGGAGGGGTTGAGAACACCACAGGAATCTCAGCATGGAGATGCAGTAATGGAGGC CACTGTCAGGGTTCGTAATGGTTCGGTTTTGGGTAAAGGTTCTATACTCAAAATGTATTTCTTTCCTGGTCAGCGGACTTCTAGCCACATACAAATTCAT GGAGCACCAAATGTTTACAAGGTGGATGGCTACCCTGTGTATAGCATGGCAACTCCAACGATTGCTGGTGCCAAAGAGGTGCTGGCATATTTGAAAGCCA AGCCCAAGATAGGAGGATCTCTGGCTCAGAAAGTGATAGTGACTGATCTCAGAGAAGAAGCAGCTGTTTACATCAATGGCACACCATTTGTCCCCAGGGA GCTAAATAAACCTGTTGACACGCTCAAGCATGTTGGAATAACTGGTCCAGTGTTAGAACTCATGGAGGCTCGACTAAAAGAAGATATAGTATCTGAGATT AGACGGTCTGGTGGTCGATTGCTTTTACATCGTGAAGAATATGATCCAGCAACAAATCAGTCCTGTATCATAGGATATTGGGAGAACATCTCTGCAGATG ATGTGAAGACACCTGCTGAAGTGTATGCTGGTCTAAAGGATGAGGGTTATGACATGACATATAGGAGGATTCCATTAGCCAGTGAGAGGGAGGCTCTAGC TTCTGATGTTGATGCAATACAGTATTGTAAAGACGACTGTGCTGGGAGCTACCTTTTTGTTTCACACACAGGGTTTGGAGGTGTTGGCTATGCAATGGCA ATTATTTGTATTAAACTTGATGCAGAAGCAAAGTTGACATCAAAGATTTCACAAACATTGGTTAGTAGCAGACGTTCATCTTCTTTGTCTGAAGCAAACT TACCTTCTGAATTGTCTGATGAAGAAGCACTGAGGATGGGAGATTACCGTGACATACTTAGTCTTACAAGGGTTCTCATTCATGGTCCACAGAGCAAAGC AGATGTTGACATTATTATTGAAAAGTGTGCAGGTGCAGGACATTTGCGTGATGATATTCATTATTACATCAAGGAACTTTGGAAGTTTCCCGATAGTGAC GATGAGCAACGTGCATGCCTCTTGGATATGGGCATTAAGGCTTTAAGGAGGTACTTCAATCTGATCACATTCAGATCATACCTGTACTCCACGAAAGCAA GTGAAACGAAATTCACATCATGGATGGATTCAAGGCCTGAACTAAGAAATCTATGTAATAATCTCAGGATCGATAAATAA
AA sequence Show only first row Show all	>Potri.002G184400.1 pacid=42778419 polypeptide=Potri.002G184400.1.p locus=Potri.002G184400 ID=Potri.002G184400.1.v4.1 annot-version=v4.1 MSMAVVQKEPEKVMKLRGGSVLGKKTILKSDHFPGCQNKRLTPQIDGAPNYRQAESLPVHGVAIPTIEGCRNVIKHIRGRKDGKQAQVLWFNLREEPLVY INGRPFVLRDVERPFSNLEYTGINRSRVEEMEARLKEDILMEAARYGNKIHVTDELPDGQMVDQWEPVSCDSVKTPVEVYEDLQVEGHLYDYERVPITDE KSPEEQDFDILVDRIYQTDLNTDIIFNCQMGRGRTTTGMVITTLVYLNRIGDSGIQRTNSVGRIFEFGLNVNENLPNSEEALLRGEYAVIRSLIRVLEGG VEGKKQVDKVIDKCASMQNLREAIANYRNSILRQSDEMKREASLSFFVEYLERYYSLICFAVYIHSERDALRSSSFGHSSFADWMRARPELYSIIRRLLR RNPMGALGYASPKPSPMRIAESADGRPHEMGVVAALRNGEVLGSQTVLKSDHCPGCQNPSLPERVDGAPNFREVPGFPVYGVANPTIDGILSVIQRIGSS KGGCPVFWHNMREEPVIYINGEPFVLREVERPFKNMLEYTGIGRERVERMEARLKEDILREAERYGGAIMVIHETDDGQIFDAWEHVNSDSIKTPLEVFK CLDTDGFPIKYARVPITDGKAPKSSDFDTLAMNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLADDMNHEEVESGSSSGEETGGDT AATTSDIGSVKTDMEQGRAFGIDDILLLWKITRLFDNGMECREALDAIIDRCSALQNIRQAVLQYRKVVNQQHVEPRVRRVALSRGAEYLERYFRLIAFA AYLGSEAFDGFCGQGESRMTFKSWLHQRPEVQAIKWSIRLRPGRFFTVPEGLRTPQESQHGDAVMEATVRVRNGSVLGKGSILKMYFFPGQRTSSHIQIH GAPNVYKVDGYPVYSMATPTIAGAKEVLAYLKAKPKIGGSLAQKVIVTDLREEAAVYINGTPFVPRELNKPVDTLKHVGITGPVLELMEARLKEDIVSEI RRSGGRLLLHREEYDPATNQSCIIGYWENISADDVKTPAEVYAGLKDEGYDMTYRRIPLASEREALASDVDAIQYCKDDCAGSYLFVSHTGFGGVGYAMA IICIKLDAEAKLTSKISQTLVSSRRSSSLSEANLPSELSDEEALRMGDYRDILSLTRVLIHGPQSKADVDIIIEKCAGAGHLRDDIHYYIKELWKFPDSD DEQRACLLDMGIKALRRYFNLITFRSYLYSTKASETKFTSWMDSRPELRNLCNNLRIDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62010			unknown protein		Potri.002G184400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	1.00	0.8968
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.014G138400 [exp]	2.44	0.8858
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	2.64	0.8802
AT1G64140			unknown protein		Potri.001G097200 [exp]	3.31	0.8706
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	4.47	0.8830
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	6.48	0.8813
AT5G13950			unknown protein		Potri.002G237800 [exp]	7.07	0.8864
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.006G086600 [exp]	9.64	0.8495
AT5G22450			unknown protein		Potri.010G238400 [exp]	10.19	0.8854
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	10.90	0.8055

Compare expression of checked genes

Potri.002G184400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.