Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 448 / 3e-156 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT1G02310 436 / 5e-152 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G10890 397 / 1e-136 Glycosyl hydrolase superfamily protein (.1) AT3G10900 379 / 1e-129 Glycosyl hydrolase superfamily protein (.1) AT5G01930 370 / 2e-125 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT4G28320 336 / 3e-112 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT2G20680 334 / 1e-111 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT3G30540 270 / 6e-88 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120500 [exp] 432 / 4e-150 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 431 / 1e-149 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 427 / 7e-148 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 390 / 9e-133 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 388 / 2e-131 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 337 / 3e-112 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 328 / 3e-109 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 290 / 3e-95 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 176 / 6e-53 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007210 [exp] 505 / 6e-179 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 488 / 2e-166 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 440 / 4e-153 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 432 / 3e-146 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 416 / 3e-143 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 416 / 5e-143 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 389 / 6e-133 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 334 / 1e-111 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 328 / 3e-109 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 326 / 3e-108 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.002G184500.1 pacid=42776752 polypeptide=Potri.002G184500.1.p locus=Potri.002G184500 ID=Potri.002G184500.1.v4.1 annot-version=v4.1 ATGAAGTGGTTGAACAGTTTCTTTTCAATGGCCCTTTTGGTTATCTTCCACCATGGACAATATTGTTGCCAGGCTGATCAATCTTCTCCAACTCATCACT GTGTTTTTGCTAAAACAAATGGAACCCAATTTGTAGTGAACAATAAGCCTCTTTACTTAAATGGCTTCAATGCATTTTGGATGATGTACATGTCATCTGA TCCATCCACGAGGAGCAAAGTCACATCTGCATTCCAGCAAGCCTCCGAGTATGGCATGAATATTGCTAGAACTTGGGCTTTCAGCGATGGTGGAAATGAT AAGCCCCTCCAGATTTCTCCAGGTATCTACAACGAGGACATGTTCAAGGGATTGGACTTCGTGGTATCAGAAGCTAGGAAATATGGGATTTATCTGATAC TGAGCTTGGTGAATAACTTCAAAGATTATGGGGGCAGATCACAATATGTTGAGTGGGCAAGGGAACGTGATCAGCAGTTGAGTGATGACGACGGGTTCTA TACAAACTCTGTTGTCAAAGAATACTACAAGAACCATGTCAAGGCAGTGCTCACGAGGATCAACTCGATAACAGGAGTTGCATATAAAGACGATCCCACC ATTTTTGCATGGGAATTGATAAACGAACCTCATTCAAATGACACTTCTGGAAAGCTAATTCAGGACTGGGTCAATGAAATGGCAGCACACGTTAAATCCA TTGATAATTACCATCTTCTTGAAATAGGGCTAGAAGGGTTTTACGGTGACTCGAAGAAGGAATCCAATCCTGGCAGCTACCTTTTTGGCACTGACTTTAT CTCCAACAACCAAATCCCGCACATAGATTTTGCCACCATTCATCTCTACCCTGAGCAATGGTTGCCAAACTCAAGCGAAGACGAGCAAGCTTCGTTTGTG GATAGATGGATCCAAGCCCATGTCCAAGACTCCAGTTCAGTGCTTGGAAAACCACTCATTATAGGAGAGTTTGGCAAGTCTTTAAAGCTTCCTGGAAATA GCCTGCAGAAAAGGGACACTTATTTTGTGAAAATCTACAGCGATATATACAATAGTGTCACAAGAGGAGGCCCATTTACTGGTGGGCTCTTCTGGCAACT CCTGGCTGAGGGAATGGAGAGCTGGGGTGACGGCTACGAGGTTGTCTTGGAGGAGTCTCCCTCAACTGCTAATATCATTGATCTACAGTCTCGCAAGTTA CAGTCTCCCTCAACTGCTAATATCATTGATCTACAGTCTCTCACATAA
AA sequence Show only first row Show all	>Potri.002G184500.1 pacid=42776752 polypeptide=Potri.002G184500.1.p locus=Potri.002G184500 ID=Potri.002G184500.1.v4.1 annot-version=v4.1 MKWLNSFFSMALLVIFHHGQYCCQADQSSPTHHCVFAKTNGTQFVVNNKPLYLNGFNAFWMMYMSSDPSTRSKVTSAFQQASEYGMNIARTWAFSDGGND KPLQISPGIYNEDMFKGLDFVVSEARKYGIYLILSLVNNFKDYGGRSQYVEWARERDQQLSDDDGFYTNSVVKEYYKNHVKAVLTRINSITGVAYKDDPT IFAWELINEPHSNDTSGKLIQDWVNEMAAHVKSIDNYHLLEIGLEGFYGDSKKESNPGSYLFGTDFISNNQIPHIDFATIHLYPEQWLPNSSEDEQASFV DRWIQAHVQDSSSVLGKPLIIGEFGKSLKLPGNSLQKRDTYFVKIYSDIYNSVTRGGPFTGGLFWQLLAEGMESWGDGYEVVLEESPSTANIIDLQSRKL QSPSTANIIDLQSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	1.41	0.9900
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	2.00	0.9845
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112500 [exp]	2.64	0.9713
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	3.16	0.9728
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	5.47	0.9698
AT4G24380			unknown protein		Potri.006G027000 [exp]	10.24	0.9542
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.003G124500 [exp]	18.57	0.9744
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	19.05	0.9455
					Potri.019G075301 [exp]	21.54	0.9741
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Potri.014G152100 [exp]	21.97	0.9188

Compare expression of checked genes

Potri.002G184500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.