Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01630 394 / 4e-140 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G20190 318 / 3e-110 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT2G40610 307 / 5e-106 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 305 / 3e-105 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 306 / 4e-105 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 301 / 1e-103 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT3G55500 293 / 3e-100 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 291 / 2e-99 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 290 / 5e-99 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G56320 288 / 3e-98 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244100 [exp] 336 / 2e-117 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.002G017900 [exp] 330 / 6e-115 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.001G001100 [exp] 314 / 9e-109 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.016G135200 [exp] 309 / 7e-107 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 309 / 9e-107 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 306 / 2e-105 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.010G167200 [exp] 306 / 2e-105 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 304 / 7e-105 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G057100 [exp] 301 / 8e-104 AT2G39700 459 / 6e-166 expansin A4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009253 [exp] 402 / 2e-143 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 399 / 2e-142 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10007205 [exp] 394 / 7e-140 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1) Lus10034548 [exp] 332 / 8e-116 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 331 / 2e-115 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 318 / 4e-110 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10034227 [exp] 309 / 9e-107 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10036763 [exp] 304 / 1e-104 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 303 / 3e-104 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 302 / 8e-104 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.002G184700.1 pacid=42777437 polypeptide=Potri.002G184700.1.p locus=Potri.002G184700 ID=Potri.002G184700.1.v4.1 annot-version=v4.1 ATGGCAAGCCTTTCTGTTCTCAGCTGTGCAGTATTTTTGTTCCTAGGTATATACTGCACACAGTTTCACTCAGCCTCCGCGGCTTGGCAACAAGCCCATG CAACTTTCTATGGGGGTAGTGATGCTTCTGGTACAATGGGTGGTGCCTGTGGATATGGAAACCTTTACACCGATGGCTACGGAATAAAAACTGCGGCACT GAGCACGGCTTTGTTCAATGATGGCAAGTCATGTGGTGGGTGCTATCAGATAATCTGTGATTCAACGAAGGTTCCTCAGTGGTGCCTAAAGGGTAAATAT ATTACCATCACTGCTACTAATTTCTGTCCACCAAATTATAACCTCCCTAATGACAATGGCGGCTGGTGCAACCCTCCTCGGCCGCATTTCGACATGTCTC AGCCTGCTTTCCAGACTATTGCCAAGTACAGAGCTGGAATTGTACCTATCCTCTACAGAAAGGTGGGCTGCGACAGAAGTGGAGGCATCAGATTTACCAT CAATGGAAAGAACTACTTTGAGCTGGTGCTCATATCCAATGTCGGTGGAGCTGGAGATATCTCTAGGGTATGGATCAAAGGGTCTAAATCTAACCAATGG GAAGCCATGTCAAGAAACTGGGGATCCAATTGGCAGAGCCTGAGCTATCTAAATGGTCAGAGCTTGTCCTTCAAAATCCAAACCAGCAATGGGCAGACCA GAACAGCACTCAACGTGGCACCCTCCAATTGGGTATTTGGGCAGTCCTTCAAAAGCAATGTTCAGTTCTAA
AA sequence Show only first row Show all	>Potri.002G184700.1 pacid=42777437 polypeptide=Potri.002G184700.1.p locus=Potri.002G184700 ID=Potri.002G184700.1.v4.1 annot-version=v4.1 MASLSVLSCAVFLFLGIYCTQFHSASAAWQQAHATFYGGSDASGTMGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYQIICDSTKVPQWCLKGKY ITITATNFCPPNYNLPNDNGGWCNPPRPHFDMSQPAFQTIAKYRAGIVPILYRKVGCDRSGGIRFTINGKNYFELVLISNVGGAGDISRVWIKGSKSNQW EAMSRNWGSNWQSLSYLNGQSLSFKIQTSNGQTRTALNVAPSNWVFGQSFKSNVQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	0	1
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	2.00	0.9723
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	4.00	0.9696
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	9.16	0.9581
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139600 [exp]	10.24	0.9690	CYP749A9
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	11.40	0.9560
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	11.48	0.9535
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	15.49	0.9588	Pt-CYP93.2
					Potri.012G045950 [exp]	19.05	0.9401
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	19.28	0.9584
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	21.02	0.9501

Compare expression of checked genes

Potri.002G184700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.