Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GLP10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62020 333 / 3e-117 GLP10 germin-like protein 10 (.1.2) AT1G02335 313 / 9e-110 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 300 / 3e-104 GLP5 germin-like protein 5 (.1) AT5G26700 268 / 1e-91 RmlC-like cupins superfamily protein (.1) AT3G05930 251 / 6e-85 GLP8 germin-like protein 8 (.1) AT1G18980 199 / 1e-64 RmlC-like cupins superfamily protein (.1) AT1G18970 195 / 4e-63 GLP4 germin-like protein 4 (.1) AT5G39160 191 / 2e-61 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 191 / 3e-61 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 190 / 6e-61 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110400 [exp] 426 / 4e-154 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.005G001300 [exp] 320 / 2e-112 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 311 / 8e-109 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.015G068200 [exp] 232 / 2e-77 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 212 / 8e-70 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 212 / 1e-69 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 211 / 2e-69 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162932 [exp] 211 / 2e-69 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 211 / 2e-69 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038014 [exp] 347 / 1e-122 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10009254 [exp] 313 / 5e-109 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2) Lus10032016 [exp] 219 / 2e-72 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 216 / 3e-71 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 216 / 4e-71 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035185 [exp] 216 / 5e-71 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10030047 [exp] 214 / 1e-70 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 214 / 2e-70 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 212 / 1e-69 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 211 / 4e-69 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.002G184900.2 pacid=42780070 polypeptide=Potri.002G184900.2.p locus=Potri.002G184900 ID=Potri.002G184900.2.v4.1 annot-version=v4.1 ATGGCAGCTGTTGTCACATATCTGGTCATCTTTACTGTCATCTCCAGCGCCCTTGCTTACGATCCTGACATGCTTCAAGACCTCTGCGTGGCTAATACTT CTGCAGGAATTAAAGTGAATGGGTTTACATGCAAGGCAGAGACAAATATCACTGAAGCTGATTTTTTCTTTGACGGTCTAGCCAAACCAGGAAAAGTTAA CAATTCAGTAGGATCACTTGTAACAGGAGGCAATGTTGAGAAAATCCCAGGCCTAAACACCCTAGGCGTGTCACTGTCTCGTATTGACTATGCACCTGAC GGCCTTAACCCACCTCACACTCACCCCCGAGCCACTGAAATGATCTTTGTGTTGGAAGGTGAACTGGATGTTGGATTTATCACCACTGCAAACAAATTGA TCTCAAAGACTGTCAAGAAAGGCGAAGTCTTTGTGTTCCCTAGAGGTTTAGTTCATTTCCAGAAGAACAACGGTGACAAGGCAGCCTCTGTAATTTCAGC ATTCAATAGTCAGTTGCCTGGTACCCAGTCCATTGCCATGACCTTGTTTACTTCAACCCCAGCAGTTCCTGACAATGTCTTGACTAAAGCTTTCCAAGTT GGTACCAAGGAGATTGACAAGATCAAAACCAAGCTTGCCCCCAAGAAGTCCTAA
AA sequence Show only first row Show all	>Potri.002G184900.2 pacid=42780070 polypeptide=Potri.002G184900.2.p locus=Potri.002G184900 ID=Potri.002G184900.2.v4.1 annot-version=v4.1 MAAVVTYLVIFTVISSALAYDPDMLQDLCVANTSAGIKVNGFTCKAETNITEADFFFDGLAKPGKVNNSVGSLVTGGNVEKIPGLNTLGVSLSRIDYAPD GLNPPHTHPRATEMIFVLEGELDVGFITTANKLISKTVKKGEVFVFPRGLVHFQKNNGDKAASVISAFNSQLPGTQSIAMTLFTSTPAVPDNVLTKAFQV GTKEIDKIKTKLAPKKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.002G184900 [exp]	0	1	GLP10.1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	1.41	0.9061
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.005G081200 [exp]	2.82	0.8470
AT5G19860			Protein of unknown function, D...		Potri.003G217200 [exp]	3.16	0.8433
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	3.74	0.8751
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	4.69	0.8157
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	7.34	0.8573
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.016G112000 [exp]	9.53	0.8260
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	9.79	0.8047
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	10.58	0.8182	LAC110b
AT1G75720			Plant protein of unknown funct...		Potri.019G021000 [exp]	15.49	0.8160

Compare expression of checked genes

Potri.002G184900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.