Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	POL.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46920 1091 / 0 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 358 / 2e-110 PLL1 poltergeist like 1 (.1) AT1G07630 353 / 6e-110 PLL5 pol-like 5 (.1) AT3G09400 335 / 2e-103 PLL3 pol-like 3 (.1.2) AT2G28890 332 / 4e-102 PLL4 poltergeist like 4 (.1) AT5G02400 331 / 2e-101 PLL2 pol-like 2 (.1) AT3G16560 170 / 5e-45 Protein phosphatase 2C family protein (.1) AT3G12620 122 / 2e-29 Protein phosphatase 2C family protein (.1.2) AT3G55050 109 / 2e-25 Protein phosphatase 2C family protein (.1.2) AT3G17090 107 / 2e-24 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110500 [exp] 1612 / 0 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G089500 [exp] 535 / 4e-178 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 521 / 5e-173 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.009G030600 [exp] 358 / 2e-111 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 358 / 3e-111 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 327 / 6e-100 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.010G024800 [exp] 196 / 1e-53 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.003G159600 [exp] 179 / 7e-48 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 164 / 7e-43 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004554 [exp] 508 / 3e-167 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 476 / 4e-156 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10040823 [exp] 353 / 6e-109 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 352 / 1e-108 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 335 / 9e-104 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 333 / 8e-103 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10004793 [exp] 209 / 2e-58 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 206 / 2e-57 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10015047 [exp] 125 / 9e-31 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10013896 [exp] 119 / 8e-29 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.002G185000.1 pacid=42776857 polypeptide=Potri.002G185000.1.p locus=Potri.002G185000 ID=Potri.002G185000.1.v4.1 annot-version=v4.1 ATGGGTAACGGCACTTCTCGTGTCGTGGGTTGTTTTGCCCTTAATGGTAAGAATGGTGTTGATTTAGAGTTTTTAGAGCCACTGGATGAAGGATTAGGCC ATTCATTTTGCTATGTTAGGCCGCCTATTTTTGACTCTCCTGCCATTACCCCCTCAAACTCTGAGAGGTTTACAGTTGATTCTAGCACTCTAGATTCTGA AACATTAAGTGGGTCGTTTAGACATGATATGATAGATGATCCCTCAGGTTTGCATAGACCAAACAAGACTTTCCCTGAAACTACATTTAAAACAATATCG GGGGCATCAGTTAGTGCCAATGTTTCGACTGCTAGGAGCGGTAACCAGAGTGCACTGTTTGCTAGTGAAGTGCAAGAGCCTGCTGCTTCATTTGAGAGCA CATCATCGTTTGCTGCAATTCCTTTGCAGCCAGTGCCTCGTGGCTCTGGACCTTTGAATGGCTTTATGTCTGGTCCTCTTGAGAGAGGTTTTGCCTCTGG TCCTTTAGATAAGGGCGGTGGCTTTATGTCTGGACCAATTGAGAAGGGGGTAATGTCTGGTCCTCTTGATGTCACTGACAAATCCAACTTCTCTGCTCCA CTTGCACGTGGTCGTCGGAGACCCCACTTCCAGCGTTTAGTGAGGAGTGTGAGTGGACCTATGAAAAGCACTCTATCACGAACATTCTCACGACATTCGA TGGGATCAGGTTGGATGCAGAGGGTTTTTTTGCACCCTGTGACCCAATTGGCATGGCAAGGTAGGGAGCCAAAGTTTCGGACAGAAGCCTCAAGGAATTG CCTTGAATCAGGGCCATCAGAGGGCGAGTATGTGAACATTCGCAACTTGCAATGGGCTCATGGCAAGGCTGGGGAAGATAGGGTTCATGTTGTGCTTTGT GATGAGCAAGGATGGTTGTTTATTGGGATATATGATGGCTTTAGTGGTCCAGATGCGCCAGATTTTCTGATGAGCCATCTCTATAGAGCTATAGATAGGG AGTTAGAAGGACTGCTGTGGGATTATGAACATAAATCTTCCAATGATCCTATAAAACCTGAACTGTCGAGGAGTAGAATTGTTGAGGCTGGTTCAGGGTG CAGCAAGGAAGAGCAGCCAAACTCGAGTCAAGTAACTTCTTGCAGTTTAAACAAATTGCGTAATCCTGGAGATGTCAGGGGTCAATCTTCTAATTGTGAG ATAGTGGAGGAAAGTGATGTCCGGGGCAGTTGGCAACAAACATCTAATTGTGAAACGCATAGCAGCTCAGGCTCTGCTTCTGCCTCTATTCCAACTGCCA ACTTGGCTGGCAAAGGAAGGAAAAGCATGCGACTTTATGAGCTGCTGCAGATGGAATCATGTGAAGGATTGGGTTCTGCATCAACCTCAGTGGTTAAAAA CCAAAGAAGCAGATCGTGGAATTTTCAACCAAGCTCAGAAGCTTTGGGTTTCAATCAAACTTTGCGAAAAGAACCGTCTAGATCTTGCTCATTGGATAAC TGCAAAGGAGATGGTTTTAATCATCGGGGTGAAGAACCAACTACATCAGGAGAAGATGGAGGGATTGGACTTGAATCTGGTAATCAAGGAGGTGGAAGTG ATCTTTCAGTTTCTGTTCAAAGACAGGGAACGAGAAAGTCTATTATCAGCTCAAAGATCCGGAAAATGTATCGGAAGCAGAAGTCCTTGCGGAAGAAACT CTTTCCCTGGAGTTATGATTGGCATAGAGAGGAGATTTATGCTGATGAGCGAGTAGTGGAACCCTCTGGACCTAGTAGGAGATGGAAATCAGGAATTGTC GATCATGATGCAGTTTTGAGAGCAATGACTCGGGCACTGCAACACACTGAAGAGGAATATATGGAAATGGTGGAGAAGGACCTTGATAAAAATGCGGAGC TTGCTTTGATGGGGTCATGTGTTCTAGTGATGCTAATGAAGGATCAAGATGTGTATGTCATGAACCTTGGGGATAGCCGTGCAATATTAGCACAAGAACG ACCGAATGATCGTCATCCTAATCCAAATTTGGTGAAGGATGACATGGGGTATAAGAATAGATCCCGAGAGTCACTAGTACGTATGGAGCTGGACAGAATT TCAGAGGAGTCTCCAATGCATAATCAAAACAATCAGGTTAATATGATTAACAAGAATAGAGAGATCTCCATTTGCAGATTAAAGATGAGGGCAGTTCAGC TTTCCACTGATCACAGCACAAGTATTGAAGAGGAAGTGTTTAGAATAAAGGCAGAACATCCTGATGACAACCAAGCAATTTTAAATGATCGAGTGAAGGG ACAATTGAAAGTAACAAGGGCTTTCGGTGCTGGTTTTTTGAAGAAGCCAACTTGTAATGAAGCTCTGCTAGAGATTTTTCAGATTGATTATGTGGGAAAT AGTCCCTATGTGAGCTGCATTCCTTCTGTAGTTCATCACCGACTTTCGTCAAGTGATCGATTCTTGGTTCTCTCCTCTGATGGACTTTACCAGTACTTCA GCAATGAAGAGGTGGTTGCTCATGTCACGTGGTTCATGGAAAATGCCCCTGGAGGTGATCCTGCACAGTATCTCATTGCAGAACTTCTCTTCCGTGCTGC CAAAAAGAATGGAATGGATTTTCATGAATTGCTTGATATTCCTCATGGAGACAGACGTAAATATCATGATGATGTCTCTGTTATGGTGGTTTCTCTGGAG GGAGGAGGGATTTGGAGATCAGCTGGCTAG
AA sequence Show only first row Show all	>Potri.002G185000.1 pacid=42776857 polypeptide=Potri.002G185000.1.p locus=Potri.002G185000 ID=Potri.002G185000.1.v4.1 annot-version=v4.1 MGNGTSRVVGCFALNGKNGVDLEFLEPLDEGLGHSFCYVRPPIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDMIDDPSGLHRPNKTFPETTFKTIS GASVSANVSTARSGNQSALFASEVQEPAASFESTSSFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDKGGGFMSGPIEKGVMSGPLDVTDKSNFSAP LARGRRRPHFQRLVRSVSGPMKSTLSRTFSRHSMGSGWMQRVFLHPVTQLAWQGREPKFRTEASRNCLESGPSEGEYVNIRNLQWAHGKAGEDRVHVVLC DEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDRELEGLLWDYEHKSSNDPIKPELSRSRIVEAGSGCSKEEQPNSSQVTSCSLNKLRNPGDVRGQSSNCE IVEESDVRGSWQQTSNCETHSSSGSASASIPTANLAGKGRKSMRLYELLQMESCEGLGSASTSVVKNQRSRSWNFQPSSEALGFNQTLRKEPSRSCSLDN CKGDGFNHRGEEPTTSGEDGGIGLESGNQGGGSDLSVSVQRQGTRKSIISSKIRKMYRKQKSLRKKLFPWSYDWHREEIYADERVVEPSGPSRRWKSGIV DHDAVLRAMTRALQHTEEEYMEMVEKDLDKNAELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPNLVKDDMGYKNRSRESLVRMELDRI SEESPMHNQNNQVNMINKNREISICRLKMRAVQLSTDHSTSIEEEVFRIKAEHPDDNQAILNDRVKGQLKVTRAFGAGFLKKPTCNEALLEIFQIDYVGN SPYVSCIPSVVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENAPGGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLE GGGIWRSAG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	0	1	POL.2
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	4.69	0.7584
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	5.65	0.7540
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	8.77	0.7245
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	9.79	0.7244
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	10.09	0.7408
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	12.00	0.7656
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	13.07	0.7311	CHR919
AT1G66910			Protein kinase superfamily pro...		Potri.017G116900 [exp]	13.49	0.7147
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	17.14	0.6462
AT2G33205			Serinc-domain containing serin...		Potri.003G174200 [exp]	17.88	0.7260

Compare expression of checked genes

Potri.002G185000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.