Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01650 246 / 6e-82 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) AT5G08720 92 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110600 [exp] 366 / 3e-128 AT4G01650 259 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.005G070700 [exp] 91 / 2e-20 AT5G08720 906 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007203 [exp] 286 / 5e-96 AT4G01650 257 / 5e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10010086 [exp] 281 / 1e-94 AT4G01650 257 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10035962 [exp] 87 / 6e-19 AT5G08720 855 / 0.0 unknown protein Lus10025701 [exp] 87 / 6e-19 AT5G08720 832 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF03364 [poplar] [flax] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.002G185100.1 pacid=42780131 polypeptide=Potri.002G185100.1.p locus=Potri.002G185100 ID=Potri.002G185100.1.v4.1 annot-version=v4.1 ATGCGCGCCTTTGGAATCCCAATAGACTCAAACTTTTGCTCCTCTTATCCTTGTCTCTTGCTGCTCCCACCCTCTGTTAGCGTTACCAGCACCAACGCCA ACACTGAACTCTCTTCTTTCTCTCCTAAATTCTTCGCAAACCTTAGCTCACAAACAAAGCACCGCCTTCTCTCTCACTTCCGACCCATCTCTCATTGTGC CAATTCCGGGTCAACTTTTTTGGACGACGACGATGATTATCACGACAATGATACTGATGATGATGGGTATTATTCGTATGTAGGTGAGGAGGAGGAGGAG GTGTCAGAAGACAGTGTGAGTGAGGATGGTGTTTTTATAGAGATAAAGAAGCTTCAAAAGAACTCGAGGAGGATTCGGTCCAAGATTTCCATAAATGCTA GCCTTGACACTGTGTGGAAGATATTAACTGATTATGAGAAGTTGGCTGATTTCATTCCCAGTCTTGCTGTCAGTAAATTAATTGACAAGAAAGACAATTT CGCTCGTCTTTATCAGATTGGACAGCAAAACTTGGCATTTGGACTGAAATTTAATGCAAAAGCAATTTTGGATTGTTACGAGAGAGACCTTCAGACGTTT ACTTCGGGGAAAAAACGTGATATTGAATTTAAGATGACGGAAGGTGACTTTCAGTGTTTTGAAGGAAAGTGGTCTATTGAACAGTTTACTAAACCCAAAA CTGAAGATTCACTTGGTCAAGAATACGAGACAAGTCTTTCATATTTGGTGGATGTAAAGCCCAAGATATGGTTGCCAGTTCACCTAATTGAAGGTAGAAT CTGCAAGGAGATAAAGTCAAATCTCACATGCATCCGTGAAGAAGCACAAAAAATGATTGGTGATGCCCTGCAGGACCAGAAGTCTTATTGA
AA sequence Show only first row Show all	>Potri.002G185100.1 pacid=42780131 polypeptide=Potri.002G185100.1.p locus=Potri.002G185100 ID=Potri.002G185100.1.v4.1 annot-version=v4.1 MRAFGIPIDSNFCSSYPCLLLLPPSVSVTSTNANTELSSFSPKFFANLSSQTKHRLLSHFRPISHCANSGSTFLDDDDDYHDNDTDDDGYYSYVGEEEEE VSEDSVSEDGVFIEIKKLQKNSRRIRSKISINASLDTVWKILTDYEKLADFIPSLAVSKLIDKKDNFARLYQIGQQNLAFGLKFNAKAILDCYERDLQTF TSGKKRDIEFKMTEGDFQCFEGKWSIEQFTKPKTEDSLGQEYETSLSYLVDVKPKIWLPVHLIEGRICKEIKSNLTCIREEAQKMIGDALQDQKSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01650			Polyketide cyclase / dehydrase...		Potri.002G185100 [exp]	0	1
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	6.85	0.9133
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	19.36	0.8963
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	19.54	0.9068	GHS1.1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	33.04	0.8975
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	33.46	0.8939
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	39.39	0.8932	Pt-PGK1.1
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Potri.013G108200 [exp]	39.93	0.8910
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	39.94	0.8951
AT4G28660		PSB28	photosystem II reaction center...		Potri.002G256400 [exp]	45.27	0.8913
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	47.32	0.8776

Compare expression of checked genes

Potri.002G185100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.