Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ROC4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62030 294 / 2e-100 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 235 / 2e-77 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT5G58710 207 / 5e-67 ROC7 rotamase CYP 7 (.1) AT2G29960 205 / 1e-66 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G21130 192 / 9e-62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 189 / 1e-60 ROC1 rotamase CYP 1 (.1) AT3G55920 189 / 7e-60 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 185 / 6e-59 ROC3 rotamase CYP 3 (.1.2) AT3G56070 185 / 9e-59 ROC2 rotamase cyclophilin 2 (.1.2) AT2G38730 177 / 1e-55 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060200 [exp] 246 / 7e-82 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G167700 [exp] 245 / 3e-81 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.010G189000 [exp] 211 / 3e-68 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 201 / 6e-65 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 201 / 1e-64 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.009G130100 [exp] 196 / 3e-63 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 196 / 5e-63 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G106200 [exp] 196 / 8e-61 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 191 / 1e-58 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011330 [exp] 247 / 3e-82 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 246 / 3e-81 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10040666 [exp] 206 / 1e-66 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 205 / 2e-66 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10014846 [exp] 201 / 8e-64 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10012167 [exp] 196 / 3e-63 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10007579 [exp] 196 / 3e-63 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10038315 [exp] 196 / 2e-62 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10023860 [exp] 196 / 9e-61 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10020992 [exp] 194 / 7e-60 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.002G185200.1 pacid=42778066 polypeptide=Potri.002G185200.1.p locus=Potri.002G185200 ID=Potri.002G185200.1.v4.1 annot-version=v4.1 ATGGCCTCTACATCGTCAATGCAAATGGCACACAGTCCTCGCCTTGTTATTCAGGGTAGTTATGAACAAGATTTTTTGAATACAAGCAGGCCACATAAGA TATCTACCATCAGAAATGCCCGGGGTGGTTACTCTCAAACTCCAACCTTGAACTGCCTTGGAAGAGCATTGACATCAAGATCTCACTATGCATCGAAATT CCCTATCATACGGCTTCCTAAAGCACCTTATATTAAGAATCAGAGAATGGCATGCGCCAACTCAATGGCAAATGATGTTGATCTACAAGCAAAAGTGACG ACCAAGTGTTTCTTTGATGTTGAAGTTGGGGGTGAACTTGTGGGTAGAATTGTAATGGGCCTTTTTGGAGATGTTGTCCCAAAAACTGCTGAGAACTTTC GTGCCTTGTGCACAGGAGATAAAGGGTATGGTTACAAAGGATGCTCCTTCCATCGTATTATCAAAGATTTCATGATCCAGGGTGGTGACTTCACGAGAGG AGATGGAACTGGAGGAAAAAGCATATATGGTTCTAGTTTTGAAGATGAGAGCTTTTCCTTGAAGCATGTTGGACCTGGTGTTTTGAGCATGGCAAATGCA GGTCCCAATACCAATGGGAGCCAGTTTTTCATTTGCTCAGTAAAGACTCCATGGCTGGACAACCGCCACGTTGTCTTTGGACATGTCATTGATGGAATGG ATGTTGTGCGCAAGCTTGAATCTGTAGAGACAAGCAGGTCAGATAATCCTCGGAAGCCATGCAGAGTTGTTAATTCTGGGGAGCTACCGCTAGATAGCTG A
AA sequence Show only first row Show all	>Potri.002G185200.1 pacid=42778066 polypeptide=Potri.002G185200.1.p locus=Potri.002G185200 ID=Potri.002G185200.1.v4.1 annot-version=v4.1 MASTSSMQMAHSPRLVIQGSYEQDFLNTSRPHKISTIRNARGGYSQTPTLNCLGRALTSRSHYASKFPIIRLPKAPYIKNQRMACANSMANDVDLQAKVT TKCFFDVEVGGELVGRIVMGLFGDVVPKTAENFRALCTGDKGYGYKGCSFHRIIKDFMIQGGDFTRGDGTGGKSIYGSSFEDESFSLKHVGPGVLSMANA GPNTNGSQFFICSVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRSDNPRKPCRVVNSGELPLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	0	1	ROC4.1
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	1.41	0.9787
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	3.74	0.9770
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	4.12	0.9549
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	4.47	0.9663
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Potri.001G141300 [exp]	6.92	0.9606
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	10.24	0.9690	Lhca6,Pt-LHCA2*1.1
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Potri.002G052400 [exp]	10.58	0.9550	Pt-RRF.1
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Potri.006G197600 [exp]	11.18	0.9523
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.005G183000 [exp]	16.94	0.9633
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	17.17	0.9641

Compare expression of checked genes

Potri.002G185200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.