Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62040 360 / 4e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G59480 296 / 2e-100 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G02230 269 / 9e-90 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 254 / 3e-84 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 229 / 2e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110800 [exp] 548 / 0 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G086900 [exp] 307 / 1e-104 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 303 / 5e-103 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 298 / 5e-100 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.010G089300 [exp] 248 / 1e-81 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 242 / 2e-79 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038016 [exp] 389 / 1e-136 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 378 / 3e-133 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010848 [exp] 298 / 1e-100 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024382 [exp] 295 / 8e-100 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 286 / 2e-96 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 284 / 3e-95 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 277 / 6e-93 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 271 / 3e-90 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 249 / 5e-82 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010537 [exp] 247 / 3e-81 AT2G32150 338 / 7e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G185300.1 pacid=42777482 polypeptide=Potri.002G185300.1.p locus=Potri.002G185300 ID=Potri.002G185300.1.v4.1 annot-version=v4.1 ATGGGATCGTTAGGTAACCTTCTTAAGATGGACGCTGCTGGGAGGGCCAACGGACCAAAATACGAGTGCTTGCTCTTTGACATGGATGATACGTTGTACC CCTTGAGTTTGGGTCTCAACATGGCTTGCCGAAAGAACATTGAAGAGTTCATGTTGCATCAGCTACATATTGAGGAAAGTGAAGTTCCGAGAATGTGCTT GGAATTATACAGGGAGCATGGAACAACAATGGCAGGTCTAAAGGCTCTTGGCTATGAGTTTGATAACGATGAGTTTCATGCTTTCGTTCATGGAAGATTG CCTTATGAAACACTGAAGCCTGATCCGGTGCTAAGGAACATTCTACTTTCCGTCCCACAGCGTAAAATAATCTTCACAAACGCTGATAAGGCGCATGCAG CTGAGGTTCTCAAAAGGATGGGATTCGAGGATTGTTTCGAAGGCGTCATTTGCTTTGAAACCCTTAATCCTCCTCTAGAAATTGCAAATAACATGGATGC ATTAGATAATGATGCAATGATTGCAGGAGGTGAGCCAGAGCCAAGTGGCTTCGATGGTACTATTGCCACTGGAAACAAAAATAAAATAAAAAATGATTTA GATAATGGTATCAGCTCCAAGTCACGAATCCTCTGTAAACCCTCTCTGGAGGCCATTGAAGCAGCTATTCAGATTGCAAATGTGGACCCAAGGAAGACAA TCTTCTTTGACGACAGTGCTCGAAACATTGCAAGTGGGAAAGCAGCAGGACTTCATACAGTTATTGTAGGGAGCTCGGTCCTTGTACCAGGTGCAGACAA TGCCTTGAGAAGCATCCACAATATCAAAGAAGCAATACCTGAAATTTGGGAGGATGAAGGAGAGGAGATGGAGCTAGTTATCCAGTCCACTACAGTCGAA ACAATGATCCTTGCTTAG
AA sequence Show only first row Show all	>Potri.002G185300.1 pacid=42777482 polypeptide=Potri.002G185300.1.p locus=Potri.002G185300 ID=Potri.002G185300.1.v4.1 annot-version=v4.1 MGSLGNLLKMDAAGRANGPKYECLLFDMDDTLYPLSLGLNMACRKNIEEFMLHQLHIEESEVPRMCLELYREHGTTMAGLKALGYEFDNDEFHAFVHGRL PYETLKPDPVLRNILLSVPQRKIIFTNADKAHAAEVLKRMGFEDCFEGVICFETLNPPLEIANNMDALDNDAMIAGGEPEPSGFDGTIATGNKNKIKNDL DNGISSKSRILCKPSLEAIEAAIQIANVDPRKTIFFDDSARNIASGKAAGLHTVIVGSSVLVPGADNALRSIHNIKEAIPEIWEDEGEEMELVIQSTTVE TMILA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62040			Haloacid dehalogenase-like hyd...		Potri.002G185300 [exp]	0	1
AT1G52540			Protein kinase superfamily pro...		Potri.006G173800 [exp]	2.23	0.9788
					Potri.002G112400 [exp]	3.74	0.9728
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	4.89	0.9812
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G165700 [exp]	5.47	0.9785	CHI3.11
					Potri.016G098300 [exp]	5.74	0.9642
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033932 [exp]	7.07	0.9694
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	8.60	0.8861
					Potri.012G054000 [exp]	8.66	0.9463
					Potri.013G007900 [exp]	9.48	0.9566
AT1G18350		ATMKK7, BUD1	MAP KINASE KINASE7, BUSHY AND ...		Potri.010G049500 [exp]	12.24	0.9389

Compare expression of checked genes

Potri.002G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.