Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01660 690 / 0 ATABC1, ATATH10, ABC1At ABC transporter 1 (.1) AT5G64940 114 / 2e-26 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G50330 102 / 6e-23 Protein kinase superfamily protein (.1.2) AT1G65950 103 / 7e-23 Protein kinase superfamily protein (.1) AT3G07700 99 / 3e-21 Protein kinase superfamily protein (.1.2.3) AT4G24810 96 / 5e-21 Protein kinase superfamily protein (.1.2.3) AT5G24810 94 / 1e-19 ABC1 family protein (.1.2) AT1G79600 89 / 2e-18 Protein kinase superfamily protein (.1) AT2G39190 86 / 2e-17 ATATH8 Protein kinase superfamily protein (.1.2) AT1G71810 86 / 3e-17 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082500 [exp] 113 / 6e-26 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 112 / 1e-25 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.012G093600 [exp] 98 / 2e-21 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G075100 [exp] 98 / 3e-21 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.015G091000 [exp] 96 / 1e-20 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 93 / 2e-19 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 90 / 2e-18 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G003600 [exp] 86 / 2e-17 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.002G061000 [exp] 85 / 5e-17 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010085 [exp] 790 / 0 AT4G01660 780 / 0.0 ABC transporter 1 (.1) Lus10038017 [exp] 790 / 0 AT4G01660 772 / 0.0 ABC transporter 1 (.1) Lus10007201 [exp] 781 / 0 AT4G01660 778 / 0.0 ABC transporter 1 (.1) Lus10005833 [exp] 134 / 5e-36 AT4G01660 129 / 6e-35 ABC transporter 1 (.1) Lus10036636 [exp] 114 / 4e-26 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10009257 [exp] 97 / 3e-24 AT4G01660 78 / 2e-18 ABC transporter 1 (.1) Lus10035853 [exp] 99 / 2e-21 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012317 [exp] 94 / 2e-19 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10032628 [exp] 92 / 4e-19 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006363 [exp] 92 / 5e-19 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.002G185400.1 pacid=42779502 polypeptide=Potri.002G185400.1.p locus=Potri.002G185400 ID=Potri.002G185400.1.v4.1 annot-version=v4.1 ATGAGTTCGTTTAATCACATAGGAAGACTGCTGAGCGGCATTTCTCTAGTAGCCAAGGAAATTGCCAAACGCTCCAAAGCTCTCGAAACTGGAGATTTCG AAACCCTAATAGCCTCCACCGCTAAGAAAGCGCTAGTCTCCGCCACCGATCTATCGGGCCTCACTAAAGGGAAAGTACGCGAGTTTTCGCCTCCCAGGCT CAATGGATCCGTCGCTTATTTCAACAATTCACCTGACTTGGCAGCAGAATCAACCCCAGCTGAATCGCAGCTGCCAATTGGCGACAACGGAAAGGAAAGC AGCGCCAGTGATGGTGTCTTGACTCCTTCGGTTTCTTTTCAAGACAAGATTTTAGAGGAGAAACGAATTTCAAAGGAGGAAATTGGTGATTTGGATAGAG ATAATAAAGGCCATGCAGGTGCTGGAGAGGTAGCTGTGGCACCGGCGGAAACCGTGGCGGCGCCGCCAGTGGTGAAGAGGAGGAAGCCTCGGGAGAGGAG AGTTCCTTCCAGTCCGTTTACAAGAGCGCTTGGGTTTGCTGGTCTAGGAGCCGGGCTTGCATGGGGAACAGTTCAGGAATCTGCAAAGAGACTTGTCTTT GGTACACCAAGTTCACAGGACAAACAATCTGCTTATTCTCCATTTTTGTCCGATAAGAATGCAGAACGCCTGGCTCTTGCATTATGCAGAATGCGTGGAG CTGCGCTCAAGATAGGACAAATGCTGAGCATACAGGACGAATCTCTTGTTCCTGCTCCGATCTTGGCTGCTTTAGATATTGTACGTCAAGGTGCAGACGT GATGCCCAAGAGCCAACTGAATCAAGTTTTGGATGCTGAGTTGGGCGCTGACTGGTCAACCAAGTTAACTAGTTTTGATTATGAACCAGTTGCTGCTGCA AGTATAGGCCAGGTGCACAAAGCAACAAAGGATGGTATGGAGGTCGCAATGAAAATTCAGTACCCTGGTGTTGCAGATAGTATTGAGAGCGACATTGAGA ATGTGAAACTTCTTTTAGATTATACAAACCTGATTCCAAAAGGACTATTTCTTGACAGAGCTATAAAGGTGGCAAAAGTAGAACTGTCTCGAGAATGTGA CTATGAGTTGGAGGCCGCCAATCAGAAACAGTTCCGTAGTCTGCTATCTGATGCTGAGGGCTTTTATGTTCCATTGGTTGTGGATGATCTTTCATGTAAA AGAGTCTTAAGTACCGAGTTTGTTTCTGGAATTCCAATTGATAAAGTAGCATCACTGAACCAAGAAACTCGTAATTATGTCGGGAGAAAGTTGCTAGAAC TCACATTGATGGAATTGTTTGTCTTCCGCTTCATGCAGACTGATCCTAACTGGAGTAATTTCTTGTATGATGAGGCTACAAACACCATCAATCTCATTGA CTTTGGAGCAGCTCGAGATTATCCTAAAAGATTTGTTGATGACTACTTAAGAATGGTTGTAGCATGTGCAAATGGTGAAAGGGATGTTGTGATTGAGATG TCAAAAAGGCTTGGATTCCTCACAGGAGAAGAATCAGAGGCAATGCTGGATGCTCATGTTCAGGCTGGTTTTATCGTGGGACTGCCATTCTCTAATCCTG GCGGGTATGACTTCCGATCCTCTAATATCACTCACAGTATGTCAAGCCTTGGGGCAACAATGCTAAGGCACAGGCTCACTCCACCTCCAGATGAGGTATA TAGCCTTCATAGAAAGCTTTCAGGTGCTTTCTTGGCTTGCATAAAGCTTGGAGCCGTTGTACCATGTAGGGAACTATTGCTCGAAGTCTACAAGGATTAT CAGTTTGGTGAAGATGGTGACAACCAGATGCTCAGTGGCTCAATTTCTTGA
AA sequence Show only first row Show all	>Potri.002G185400.1 pacid=42779502 polypeptide=Potri.002G185400.1.p locus=Potri.002G185400 ID=Potri.002G185400.1.v4.1 annot-version=v4.1 MSSFNHIGRLLSGISLVAKEIAKRSKALETGDFETLIASTAKKALVSATDLSGLTKGKVREFSPPRLNGSVAYFNNSPDLAAESTPAESQLPIGDNGKES SASDGVLTPSVSFQDKILEEKRISKEEIGDLDRDNKGHAGAGEVAVAPAETVAAPPVVKRRKPRERRVPSSPFTRALGFAGLGAGLAWGTVQESAKRLVF GTPSSQDKQSAYSPFLSDKNAERLALALCRMRGAALKIGQMLSIQDESLVPAPILAALDIVRQGADVMPKSQLNQVLDAELGADWSTKLTSFDYEPVAAA SIGQVHKATKDGMEVAMKIQYPGVADSIESDIENVKLLLDYTNLIPKGLFLDRAIKVAKVELSRECDYELEAANQKQFRSLLSDAEGFYVPLVVDDLSCK RVLSTEFVSGIPIDKVASLNQETRNYVGRKLLELTLMELFVFRFMQTDPNWSNFLYDEATNTINLIDFGAARDYPKRFVDDYLRMVVACANGERDVVIEM SKRLGFLTGEESEAMLDAHVQAGFIVGLPFSNPGGYDFRSSNITHSMSSLGATMLRHRLTPPPDEVYSLHRKLSGAFLACIKLGAVVPCRELLLEVYKDY QFGEDGDNQMLSGSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Potri.002G185400 [exp]	0	1
AT1G08410			P-loop containing nucleoside t...		Potri.009G017000 [exp]	2.23	0.8626
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	2.44	0.8588
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	4.24	0.9081
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	4.69	0.8818
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	5.47	0.8749	GCN4.3
AT3G09180			unknown protein		Potri.016G070700 [exp]	7.34	0.8419
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	9.00	0.8032
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.017G084300 [exp]	16.12	0.8538
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	19.79	0.8627
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	20.14	0.8275

Compare expression of checked genes

Potri.002G185400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.