Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46940 111 / 7e-29 unknown protein AT3G62070 106 / 2e-27 unknown protein AT4G01670 99 / 3e-24 unknown protein AT2G31560 59 / 2e-10 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 56 / 2e-09 Protein of unknown function (DUF1685) (.1) AT1G05870 55 / 6e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111000 [exp] 422 / 3e-150 AT2G46940 148 / 4e-43 unknown protein Potri.007G126700 [exp] 58 / 6e-10 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 52 / 9e-08 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038023 [exp] 179 / 2e-54 AT2G46940 162 / 4e-49 unknown protein Lus10007198 [exp] 169 / 6e-51 AT2G46940 157 / 1e-46 unknown protein Lus10010083 [exp] 165 / 3e-49 AT2G46940 160 / 7e-48 unknown protein Lus10009965 [exp] 114 / 4e-30 AT2G46940 89 / 4e-21 unknown protein Lus10027022 [exp] 52 / 9e-08 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 52 / 1e-07 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G185700.1 pacid=42779233 polypeptide=Potri.002G185700.1.p locus=Potri.002G185700 ID=Potri.002G185700.1.v4.1 annot-version=v4.1 ATGGCTTCTGATGCGAGCATGGCCACGCTGTCTTCTTCTGTTCAAGAAGATGATCAATATGATCATGATCATGACACGGATGATGGGTATCACCCCCCTA GTCTTCATAACTTGTCTAGGCTGTCCATGTGTACAAGTTCCATGTACACTAATGAAGACGATGATTATCAAGATTGTGATGGGATGACGATGTTTGCGTC AAGACTGACTATAGAAAGTTTCGACGCTGATGAGGAACTCTCTGATGATCAAAAAGAAGGTAATCACAAAAACATACTGCACCTCTCTTCTGATTCTGAT AAAGAAACAGGCTGCTACTCGCTTCCAGCAACACCACCTCGTTGGAGAAATCGCGGTGGCCCAAGAAATCAAGTGCAATTAATCGGAGTAACAGATTATG CCAGTGAAAATGAAGCTCAAAAGGGTATTATGAGGCAAAAGATGAGAAAGAATTTGAGGAAAAGAAGGGTCATAAGAGAAAGACGGATGGACAACAGCAA TACGAGTTTTAAAAAGAAAGAAGAGGAGATCACAGGGCTGAGTAATTACGGTTCTTGTAATAGTTTTAGTGGGGAGAGTGAAGGTGGTGGGTTGGTAGTG ATAACAAGGCCAAAAGGAGGGAGGAGGTCATTGTGTATGGACTTGGAAGAAGTGAAGGCTTGTAGGGATCTTGGGTTTGAATTGGAACATGAGAGGATGC TGGAGTTGCCTAGTAGTCGTGTCTCTCTTTCAGGATCCACTCTTGACACTAGTAGTGGTGGCGATTCTCCTATTGCTAACTGGCGCATCTCTAGCCCTGG TGATGATCCGCGGGATGTTAAGGCTAGGCTTAAAGTATGGGCACAGGCAGTGGCAGTGGCGTCTGCATCTAGACATGGTGGCATCTGA
AA sequence Show only first row Show all	>Potri.002G185700.1 pacid=42779233 polypeptide=Potri.002G185700.1.p locus=Potri.002G185700 ID=Potri.002G185700.1.v4.1 annot-version=v4.1 MASDASMATLSSSVQEDDQYDHDHDTDDGYHPPSLHNLSRLSMCTSSMYTNEDDDYQDCDGMTMFASRLTIESFDADEELSDDQKEGNHKNILHLSSDSD KETGCYSLPATPPRWRNRGGPRNQVQLIGVTDYASENEAQKGIMRQKMRKNLRKRRVIRERRMDNSNTSFKKKEEEITGLSNYGSCNSFSGESEGGGLVV ITRPKGGRRSLCMDLEEVKACRDLGFELEHERMLELPSSRVSLSGSTLDTSSGGDSPIANWRISSPGDDPRDVKARLKVWAQAVAVASASRHGGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46940			unknown protein		Potri.002G185700 [exp]	0	1
					Potri.017G106601 [exp]	3.46	0.8372
					Potri.016G064901 [exp]	10.39	0.8487
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Potri.006G092400 [exp]	11.74	0.8021
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.007G029200 [exp]	16.24	0.8448
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031600 [exp]	16.61	0.7754	NAC125
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	18.70	0.8292
AT5G62680			Major facilitator superfamily ...		Potri.012G071500 [exp]	23.04	0.8395
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	26.72	0.7938
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	28.14	0.8146
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037533 [exp]	32.03	0.7618

Compare expression of checked genes

Potri.002G185700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.