Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62080 426 / 3e-147 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038021 [exp] 354 / 5e-119 AT3G62080 323 / 5e-107 SNF7 family protein (.1.2) Lus10009262 [exp] 338 / 5e-113 AT3G62080 335 / 1e-111 SNF7 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.002G186100.1 pacid=42779707 polypeptide=Potri.002G186100.1.p locus=Potri.002G186100 ID=Potri.002G186100.1.v4.1 annot-version=v4.1 ATGGATTCCGTGTCGTCGGTGAAGGAATTCATAAGAAAACAAGTCCCCGATTGGGACGACGAAATAATGGCCACAGCCCGATTCAAAGCATTTAGTGGGC AAAGATCCGATTGGGAACCCAAATACTTGTTCTGGAAAGATTTAATCCTCAAAATTGCTCGACATCTCGACCTCTTCATTATTCAACCTTCTCAGGTAAA GGAGAAGTGGTTCAATCGTGGAGGTTTAACGCCTTTATGCCTTGATCATGTACTGTGCTTAATGTATAATGAAGGTGATATTGTGCGAAATGTGGATCTT GTAGACCCAAGTAGTGGTCGAATCTCTCAGTTATTCAGAAAAGTTAGAAATTTGATGGTCAGATCACCTGTTACTCCAGAAATAATTATGCTTGAAGATC ATCTCTTTCTTACACCATTATTGAAGGATAAAACTGCTCAGATTATCAAATGCTTATCTGAAAGTCATTGGACTTCTTCGTGCATTATTACTATGAGCAA GTTCCAGGGCATGTGTGGAGGACCATCTGAGGCAGCTCCTCTCTTGAGTTATCTATCTGGACTTGGGAAAGCACAATATTTCTCAATTTCTAAGGAGGTT ATAGAGGGAGTGAAAATTTCCCTTTCATCAGCATCAGTTCCCGCCATCTCAAGTCTAGATTTGGATGTCCTGCACTTGATTTGGACAGCGCAAAAGCTTG AGGACCAAATTGACGTGATTGACAGACGATATGAAATGTCAAGAAAATCAGCATTAGCTTCTTTAAATTCTGGAAACAAGAAAGTAGCCCTGAGGCATGC TAGAGAGATGAAGTTGGCCTTGGAGAGTAGAGAAAGGTGTACGTCACTTTTGAACAGAGTGGAGGAAGTTCTGAATGTCATCGCAAATGCTGAATCTACA CAAAAGGTAACTGAGGCCATCAGAATTGGAGCTGAAGCAATGAAACAAAATAAGATAACGGTAGAGGAGGTTGAAAACTGTTTAGAAGAACTTGAGGAGA GTATTGATGCACAAAAACAAGTTGAAAAGGCTCTAGAATCAAATCCAATTTCAGGTATTGAAGATGAAGATATAGAAGAGGAATTAGAAAAGCTAGAGTT GGAATTAGAAAGTGAAAACCTTCAAATATCGAAAGTCGAGGTTGGCAATACATCAGGAGAAATGGATGCTTTGGGATCCCCTGACTCGCTAACTGATGCT TTGTCAAATTTAAAGCTCCATGATGGTTCAGCTAGGGGATCTGTAAGTCAGAAGTCTCCATTCCCGACGAGAACTAAAAATTCAAAGCATGCGATGCTTG AAGCAGCATAA
AA sequence Show only first row Show all	>Potri.002G186100.1 pacid=42779707 polypeptide=Potri.002G186100.1.p locus=Potri.002G186100 ID=Potri.002G186100.1.v4.1 annot-version=v4.1 MDSVSSVKEFIRKQVPDWDDEIMATARFKAFSGQRSDWEPKYLFWKDLILKIARHLDLFIIQPSQVKEKWFNRGGLTPLCLDHVLCLMYNEGDIVRNVDL VDPSSGRISQLFRKVRNLMVRSPVTPEIIMLEDHLFLTPLLKDKTAQIIKCLSESHWTSSCIITMSKFQGMCGGPSEAAPLLSYLSGLGKAQYFSISKEV IEGVKISLSSASVPAISSLDLDVLHLIWTAQKLEDQIDVIDRRYEMSRKSALASLNSGNKKVALRHAREMKLALESRERCTSLLNRVEEVLNVIANAEST QKVTEAIRIGAEAMKQNKITVEEVENCLEELEESIDAQKQVEKALESNPISGIEDEDIEEELEKLELELESENLQISKVEVGNTSGEMDALGSPDSLTDA LSNLKLHDGSARGSVSQKSPFPTRTKNSKHAMLEAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62080			SNF7 family protein (.1.2)		Potri.002G186100 [exp]	0	1
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	12.16	0.7212
					Potri.008G176201 [exp]	14.35	0.7518
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	22.18	0.7144
					Potri.008G195401 [exp]	25.27	0.7199
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	37.22	0.6921
AT3G11900		ANT1	aromatic and neutral transport...		Potri.016G064500 [exp]	37.94	0.6474	Pt-ANT1.2
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	38.96	0.6953
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.010G162500 [exp]	71.05	0.6322
					Potri.006G273733 [exp]	74.45	0.6524
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	74.45	0.6379

Compare expression of checked genes

Potri.002G186100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.