Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01690 822 / 0 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2) AT5G14220 177 / 4e-49 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G57770 48 / 1e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G02350 0 / 1 protoporphyrinogen oxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111600 [exp] 993 / 0 AT4G01690 845 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.001G333500 [exp] 167 / 3e-45 AT5G14220 701 / 0.0 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) Potri.017G144001 [exp] 45 / 0.0001 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 42 / 0.0007 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007194 [exp] 823 / 0 AT4G01690 809 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Lus10010082 [exp] 809 / 0 AT4G01690 823 / 0.0 Flavin containing amine oxidoreductase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G186300.1 pacid=42776809 polypeptide=Potri.002G186300.1.p locus=Potri.002G186300 ID=Potri.002G186300.1.v4.1 annot-version=v4.1 ATGACTACCTTCATTGACTTCTCTCTTCTCCGTCCAACAACGCCCTCTCTCATCCCCTCCTCATTCTCAAAATTCTCCACTCCCAGACCCTTTAAACTCC GATGCTCCCTAACCGAAGAGTCAGCTACAATTACTCCGTCGAAGCTCAACGGCGAAGCCCAGTCCAACGGCGGACATTCTGCCGCGGCGGATTGTGTCAT TGTCGGAGGAGGCATTAGTGGGCTCTGTATCGCCCAGGCTCTTGCAACCAAACACCGGGATGTTGCTCCCAATGTGATTGTCACCGAAGCCAGAGATCGC GTCGGTGGCAACATTACCACCCTGGAAAGAGATGGTTATCTATGGGAAGAGGGCCCCAACAGTTTCCAGCCTTCCGATCCTATGCTCACTATGGTGGTGG ATAGTGGATTAAAAGAGGATTTGGTACTAGGGGATCCAAATGCGCCCCGTTTTGTATTGTGGAATGGGAAGTTAAGGCCAGTACCAGGCAAGCCTACTGA CTTGCCATTTTTCGACTTGATGAGTATTGGTGGCAAACTCAGAGCTGGATTTGGTGCTCTTGGACTTCGGCCTCCGCCACCAGGACATGAAGAATCAGTT GAAGAGTTTGTGCGGCGTAACCTTGGTGATGAGGTTTTCGAGCGATTGATTGAGCCTTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCCAAACTAAGCA TGAAAGCGGCTTTTGGAAAAGTTTGGAACCTGGAGCAAACTGGTGGTAGTATCATTGGTGGAACTTTCAAAACAATCCAGGAGAGAAGAAAAAACCCCAA GCCACCTCGAGACCCGCGCCTACCAACACCAAAGGGCCAAACTGTTGGATCTTTTAGAAAAGGACTTGCTATGTTGCCTGATGCAATAGCAACAAGGTTG GGTAGCAATGTAAAATTATCTTGGAAGCTGGCAAGCGTCATTAAATTGGATAGTGGTGGATATAGTTTGACATATGAAACACCTGAAGGATTAGTTTCTC TACTGAGCAAAAGCGTGGTCTTCACTATTCCATCCCACATTGCAAGCACTCTACTGCATCCGCTTTCTGCTACAGCTGCAGATGCACTATCAAAATTTTA TTACCCACCAGTAGCAGCAGTGTCTGTTTCATATCCAAAGGAAGCAATTAGACCAGAACGATTAATAGATGGTGAACTCAAGGGGTTTGGTCAGCTGCAT CCACGAAGCCAAGGGGTGGAAACATTAGGAACTATATATAGCTCATCTCTTTTTCCTAATCGTGCTCCTACTGGAAGGATTTTGCTCTTGAACTACATTG GAGGAACTACTAACCCTGGAATAGTGTCTAAGACAGAGAGTGAACTTGTAGAAGCAGTTGATCGTGATTTGAGAAAGATGCTTATAAATCCTAACGCGAC AGATCCTCTTGTATTAGGGGTGAGAGTATGGCCACAAGCCATTCCTCAGTTCTTGATTGGTCATTTTGACATCCTAGATGCTGCAAGAGATGCTCTCAAG GCTAAAGGGTTGCAGGGGCTGTTTCTTGGGGGGAACTATGTATCTGGTGTTGCGTTGGGCCGATGTGTAGAAGGAGCTTATGAAGTTGCTGCTGAGGTAA CTGATTTCCTCTCCCAGTATGCCAACAAATAG
AA sequence Show only first row Show all	>Potri.002G186300.1 pacid=42776809 polypeptide=Potri.002G186300.1.p locus=Potri.002G186300 ID=Potri.002G186300.1.v4.1 annot-version=v4.1 MTTFIDFSLLRPTTPSLIPSSFSKFSTPRPFKLRCSLTEESATITPSKLNGEAQSNGGHSAAADCVIVGGGISGLCIAQALATKHRDVAPNVIVTEARDR VGGNITTLERDGYLWEEGPNSFQPSDPMLTMVVDSGLKEDLVLGDPNAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKLRAGFGALGLRPPPPGHEESV EEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWNLEQTGGSIIGGTFKTIQERRKNPKPPRDPRLPTPKGQTVGSFRKGLAMLPDAIATRL GSNVKLSWKLASVIKLDSGGYSLTYETPEGLVSLLSKSVVFTIPSHIASTLLHPLSATAADALSKFYYPPVAAVSVSYPKEAIRPERLIDGELKGFGQLH PRSQGVETLGTIYSSSLFPNRAPTGRILLLNYIGGTTNPGIVSKTESELVEAVDRDLRKMLINPNATDPLVLGVRVWPQAIPQFLIGHFDILDAARDALK AKGLQGLFLGGNYVSGVALGRCVEGAYEVAAEVTDFLSQYANK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	0	1
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	5.47	0.9484
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	5.74	0.9279
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	7.07	0.9288
					Potri.016G121650 [exp]	7.48	0.9294
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Potri.012G038200 [exp]	8.00	0.9244
AT2G32500			Stress responsive alpha-beta b...		Potri.014G154900 [exp]	8.24	0.9464
AT2G36885			unknown protein		Potri.016G098900 [exp]	9.74	0.9342
					Potri.017G095500 [exp]	10.48	0.9035
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	10.95	0.9444
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	12.96	0.9269

Compare expression of checked genes

Potri.002G186300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.