Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02360 413 / 2e-147 Chitinase family protein (.1) AT4G01700 413 / 4e-147 Chitinase family protein (.1) AT3G12500 322 / 3e-110 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT3G16920 176 / 3e-53 ATCTL2 chitinase-like protein 2 (.1) AT1G05850 173 / 3e-52 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G54420 171 / 3e-52 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 168 / 4e-51 Chitinase family protein (.1) AT2G43620 153 / 5e-45 Chitinase family protein (.1) AT2G43610 152 / 2e-44 Chitinase family protein (.1) AT2G43580 142 / 9e-41 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111800 [exp] 516 / 0 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 312 / 9e-107 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 309 / 2e-105 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 287 / 7e-98 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 275 / 9e-92 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 270 / 5e-90 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 255 / 3e-84 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 215 / 3e-68 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.013G125000 [exp] 183 / 1e-56 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038026 [exp] 421 / 3e-150 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10009968 [exp] 419 / 2e-149 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10041830 [exp] 296 / 4e-100 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 286 / 3e-96 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10000453 [exp] 179 / 5e-55 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 179 / 1e-54 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 179 / 1e-53 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10041278 [exp] 176 / 2e-53 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 176 / 2e-53 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10003587 [exp] 171 / 8e-53 AT2G43590 270 / 1e-91 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Potri.002G186500.1 pacid=42779883 polypeptide=Potri.002G186500.1.p locus=Potri.002G186500 ID=Potri.002G186500.1.v4.1 annot-version=v4.1 ATGGCATCTCCTGCTTATACTTTGTTGTCATTCACTTTTTACACCATCTTCCTCTCGTCTGGATCATATAAAGCTGAAGCTTGGAGATTCAATGACATCT CTTCTCTTGTTAGTAAAGGCCTCTTTGATTCCATATTTCTACACAAGGACAACAACGCATGCCCTGCTAAAGATTTTTACACGTACAGCTCCTTCATTCA AGCATCTAGATCTTTTCCTCGGTTCGGCAGGACAGGTAGTTCTATAAAGAGGAAGCGAGAAATTGCAGCTTTTCTTGCTCAGATATCCCATGAGACCACA GGTGGGTGGCCTACCGCACCCGATGGACCATTTGCATGGGGTTTGTGCTTCAAGGAAGAAGTGAGTCCACAAGGTAATTACTGTAACTCAAGCAACACTC GATGGCCATGCTCCCCTGGGAAATCCTACAAAGGAAGAGGGCCTATTCAACTATCATGGAATTACAATTATGGACCAGCAGGCAAGGCATTAGGATTTGA TGGGCTTAACAACCCAGATATAGTGTCTAACAACTCCTTAATCGCCTTCAAGACAGCTCTTTGGTTTTGGATGACTAAGCAGAGCCCAAAACCATCTTGC CACAACGTCATGATTGGAAAATATAAGCCAACAGCAGCTGGTGTGGCAGCTAATCGGACTGCCGGCTACGGGTTGGTGACTAACATCATCAACGGTGGTC TTGAATGTGGAATACCTAACGATGCGCGAGTTAATGATCGGATTGGGTTTTTTCAGAGATACGCAGCATTGTTTAATGTAAGTACTGGGCCTAACTTAGA TTGTGAAAATCAGAAGCCCTTTACTTAG
AA sequence Show only first row Show all	>Potri.002G186500.1 pacid=42779883 polypeptide=Potri.002G186500.1.p locus=Potri.002G186500 ID=Potri.002G186500.1.v4.1 annot-version=v4.1 MASPAYTLLSFTFYTIFLSSGSYKAEAWRFNDISSLVSKGLFDSIFLHKDNNACPAKDFYTYSSFIQASRSFPRFGRTGSSIKRKREIAAFLAQISHETT GGWPTAPDGPFAWGLCFKEEVSPQGNYCNSSNTRWPCSPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLNNPDIVSNNSLIAFKTALWFWMTKQSPKPSC HNVMIGKYKPTAAGVAANRTAGYGLVTNIINGGLECGIPNDARVNDRIGFFQRYAALFNVSTGPNLDCENQKPFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	0	1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.007G090100 [exp]	1.41	0.9847
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	1.41	0.9841
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.018G139400 [exp]	3.16	0.9744	PIN9,Pt-PIN2.4
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	4.00	0.9795
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	4.24	0.9736
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012500 [exp]	4.47	0.9651
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.012G049900 [exp]	6.24	0.9621
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.013G092400 [exp]	7.00	0.9734	NAC064
AT3G42180			Exostosin family protein (.1.3...		Potri.018G124832 [exp]	8.00	0.9603
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	8.12	0.9645

Compare expression of checked genes

Potri.002G186500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.