Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01730 520 / 0 DHHC-type zinc finger family protein (.1) AT2G33640 196 / 7e-56 DHHC-type zinc finger family protein (.1) AT3G22180 188 / 4e-52 DHHC-type zinc finger family protein (.1) AT4G15080 145 / 4e-37 DHHC-type zinc finger family protein (.1) AT1G69420 129 / 7e-32 DHHC-type zinc finger family protein (.1.2) AT3G26935 70 / 1e-12 DHHC-type zinc finger family protein (.1) AT3G56930 69 / 3e-12 DHHC-type zinc finger family protein (.1.2) AT3G04970 67 / 6e-12 DHHC-type zinc finger family protein (.1.2) AT4G22750 67 / 6e-12 DHHC-type zinc finger family protein (.1.2) AT5G41060 67 / 9e-12 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112000 [exp] 808 / 0 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 191 / 9e-57 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 169 / 7e-46 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 158 / 8e-42 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 141 / 9e-36 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 138 / 1e-34 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.010G163200 [exp] 135 / 4e-34 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.001G070100 [exp] 70 / 1e-12 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 69 / 3e-12 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038029 [exp] 582 / 0 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 509 / 4e-178 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1) Lus10030426 [exp] 180 / 2e-50 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 177 / 1e-48 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10039043 [exp] 150 / 1e-38 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 148 / 3e-38 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 145 / 1e-37 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10027339 [exp] 145 / 8e-37 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 136 / 1e-34 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10025157 [exp] 136 / 2e-34 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G186800.1 pacid=42777600 polypeptide=Potri.002G186800.1.p locus=Potri.002G186800 ID=Potri.002G186800.1.v4.1 annot-version=v4.1 ATGATATCCATGGCCACGAGGCGCCATGGTTGGCAACGCCCTCTCCACCCTTTACAGATGATAGGAATGGCAGTTTACAGTTTTCTGGTTGTGACCTTCT ATACATTCCTTGGACTTTTCCTTGGAAACAGAATTGCTGAAATTACAGTCACTGCAATCTTTACTTTTGTGGCAGTTCCAGTTATGTTCCTGTTTGTTAG GTGTACTGCCATTGATCCGACTGATAAGACCAGGTTTAGGAAGAAGAAAAGAGCTAAATCAGATGGGTTTCCAAAGTTAAATTATTGGTTTATATTGAAT CAAATAATCATGAGGTTTTTTAGAAGGATGGAAAGAAAGATCCTTAAAACCTTTATAAGGAGAAAGTATTTGGACCCATTGAAGGCCAATGCTCAAATGG AGCCATTGCTTCCATTTCCACTTGTCATGAAGGATGATGCAGTTTCACCTGACCCAAAAGATGATGACATCTCTTATTGCTCGCTATGTGATTTTGAGGT AAAGAAGCGAAGTAAGCACTGTAGAGCCTGTAACAGGTGTGTTGAAGGGTTTGATCACCATTGCAGGTGGTTAAACAATTGTGTTGGCAAGAGGAATTAC ACAACTTTCTTTCTTCTAATGATATTTGTCTTGTTAATGTTAATCATAGAAGGAGGAACTGCCATTGCCATATTTATAAGGTGCTTTACTGATAAGAAAG GAATAGAAAGGGAGCTGGAGAGGAGGCTACATGTGGAATTCCCAAGAGGGGTTCTTGCCACAATATCAGTTTTGTTGGTTTTAATGACAGCTTATAGTTC AGCAGCCATGGGACAACTTTTCTTTTTTCATGTGGTTCTCATACGCAAGGGAATGAGAACATATGATTATATCCTGGCCATGAAAGAGGTAAACGAATCA ATTGAACTAGATCCATTGGAAGATTCAGATCTCTCTTCAGACTCGGATTTTGACTCTCCTGAAAAATCAACAATTGTTTCACGGTTTTGTGGCCATAGAG AAAATGAGAACCCTGCAAGTCTGTCAATAAAAATTGATAGGGGGGATCCTGAGTCTTCCAACTTAACCAAGAAACAAGGCTTTCGTGCAAGCATCAATCC ATGGAAACTAATCAAGTTGAGCAGAGAGAAAGCTGTGCTAGCAGCTGAGAAGGCCAGAGAAAGGATTATGAAACAGAAACCAGTCGAGCAACCAAATTCA TTAAGGCCCCTACCGTCGGAGACTAAATGTGGACCATTGATGAACCAAAACAAGAATGTGATCAATGTGGAATCAGGTTCAACACCACTTATTTCCGAAG GGAGGGTTCCAGTGTCACTTGGAAGCCTCTCAAGTCCAAGAAGGCGTTTTTCTGGCTCCCAAAGCATGTTTTCTGGCTACATACCTTCGCCAAAGAATAA ATACAGTAGCAGTTTTGATTTGAAGTTGACAGAAGTTTCCAGGGAGCTCGAAACCTATATTTCGAGGCAGGTTTTGTGTTCTGTAATGAAAAAAGATGCC CAAGAGGCTTCCCCAAAATAA
AA sequence Show only first row Show all	>Potri.002G186800.1 pacid=42777600 polypeptide=Potri.002G186800.1.p locus=Potri.002G186800 ID=Potri.002G186800.1.v4.1 annot-version=v4.1 MISMATRRHGWQRPLHPLQMIGMAVYSFLVVTFYTFLGLFLGNRIAEITVTAIFTFVAVPVMFLFVRCTAIDPTDKTRFRKKKRAKSDGFPKLNYWFILN QIIMRFFRRMERKILKTFIRRKYLDPLKANAQMEPLLPFPLVMKDDAVSPDPKDDDISYCSLCDFEVKKRSKHCRACNRCVEGFDHHCRWLNNCVGKRNY TTFFLLMIFVLLMLIIEGGTAIAIFIRCFTDKKGIERELERRLHVEFPRGVLATISVLLVLMTAYSSAAMGQLFFFHVVLIRKGMRTYDYILAMKEVNES IELDPLEDSDLSSDSDFDSPEKSTIVSRFCGHRENENPASLSIKIDRGDPESSNLTKKQGFRASINPWKLIKLSREKAVLAAEKARERIMKQKPVEQPNS LRPLPSETKCGPLMNQNKNVINVESGSTPLISEGRVPVSLGSLSSPRRRFSGSQSMFSGYIPSPKNKYSSSFDLKLTEVSRELETYISRQVLCSVMKKDA QEASPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	0	1
AT3G53320			unknown protein		Potri.016G085600 [exp]	3.31	0.9194
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	4.47	0.9188
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.014G084200 [exp]	8.06	0.9008
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	10.24	0.9175	Pt-CDC20.3
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Potri.001G099100 [exp]	10.72	0.8838
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	11.04	0.8325
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	12.96	0.8859
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	14.42	0.8644
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	19.49	0.9118
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	20.49	0.8941

Compare expression of checked genes

Potri.002G186800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.