Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62110 666 / 0 Pectin lyase-like superfamily protein (.1) AT3G16850 459 / 2e-159 Pectin lyase-like superfamily protein (.1) AT4G23820 454 / 8e-158 Pectin lyase-like superfamily protein (.1) AT4G23500 453 / 1e-156 Pectin lyase-like superfamily protein (.1) AT3G61490 449 / 2e-155 Pectin lyase-like superfamily protein (.1.2.3) AT5G49215 438 / 2e-151 Pectin lyase-like superfamily protein (.1.2) AT5G41870 436 / 2e-150 Pectin lyase-like superfamily protein (.1) AT3G48950 431 / 3e-148 Pectin lyase-like superfamily protein (.1) AT4G33440 430 / 7e-148 Pectin lyase-like superfamily protein (.1) AT3G06770 426 / 1e-146 Pectin lyase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112100 [exp] 826 / 0 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 486 / 3e-170 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 483 / 9e-169 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 464 / 6e-161 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 462 / 3e-160 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 456 / 1e-158 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 452 / 1e-156 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.007G105800 [exp] 440 / 2e-151 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 434 / 4e-149 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038030 [exp] 697 / 0 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009972 [exp] 504 / 5e-179 AT3G62110 446 / 2e-156 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 476 / 6e-166 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037714 [exp] 470 / 1e-163 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 454 / 1e-157 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 454 / 3e-157 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10032374 [exp] 446 / 3e-154 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 437 / 2e-150 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 433 / 9e-149 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 424 / 2e-145 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.002G186900.2 pacid=42779174 polypeptide=Potri.002G186900.2.p locus=Potri.002G186900 ID=Potri.002G186900.2.v4.1 annot-version=v4.1 ATGAGGAGATCTTTTACTCTGGTGAATGTGCTGCTGTTACTTGCATTATTCGGTGATGCTCCATGGGCTATCAAGTGCAGCTTACTTTGCGAACAGGGCA ACCTGGCAGTGATTCGACCTCACAGTGTCACTATTACTGAATTTGGAGCAGTTGGAGATGGGGTCACTCTCAACACAAAGGCATTCCAGAATGCCATCTT CTATCTCAATTCATTTGCTGACAAGGGCGGGGCCAAGCTCTTTGTCCCAACTGGCCGTTGGTTGACAGGAAGCTTTGATCTGATCAGTCATCTGACATTG TGGTTAGATAAGGATGCTGTCATCCTTGGATCAACTAACTCTGATGATTGGCCAGTTATTGATCCACTGCCATCATATGGCCGAGGGAGGGAGTTGCCTG GGAGGAGGCACAAAAGCCTTATTTATGGTCGTAATTTAACAGATGTTATTATAACAGGTGACAATGGAACTATTGATGGCCAAGGCAGCATATGGTGGGA CTGGTTTCGAAATCAAACCTTGAACTATACCCGGCCTCATCTGGTTGAATTTATGAACACTACTGGGGTAGTCATCTCAAACCTGACTTTCATAAATTCA CCGTTCTGGACCATCCACCCTGTTTACTGCAGCCAAGTTATTGTTCAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAACACTGATGGGATTGATC CAGATTCTTCTGATGATGTTTGTGTTGAGGACTGCTACGTTAGCACTGGTGATGATATAATTGCCATCAAAAGTGGGTGGGATGAGTATGGCATGTCATA TGGTCGTCCTAGCAAAAACATTACCATTCGCAGGCTTGTTGGACAAACTACTAGTGCTGGGATTGCAATTGGAAGTGAGATGTCTGGAGGAGTGTCAGAG GTTCATGCAGAAAATCTCAGGTTCTACAATTCAACTACAGGTATCAGGATAAAAACGTCTCCTGGAAGGGGGGGATATGTGAGGAACATTTATATATCAA ATATGAGCTTGACTGATGTCAAAACAGCTATAAGTTTCACTGGTCGATATGGAGAGCACCCAGATGAGTATTATGATCCAACTGCTCTCCCTTTAATAGA ACGAATAACCGTTGAGGATGTTGCGGGACAGAATGTTAAATATGCTGGCCTTTTGGAGGGCATAGAAGGGGATACTTTTCTTGACATTTGCCTGTTGAAC ATTAACCTCAGTGTGACCTCGAAGTCTCCATGGAATTGTTCATATATCCAAGGGTATTCTGACACGGTTTCCCCAGAGATTTGTGAGCCTCTCAGGGAGA GAATCTTCCCTGACCATTACTCAGATTGTTACTGTCTATCACATCACTTGCAAAGTTCAAGTAATCAAAACAGAGGTGGTGCTTGGTTGTCTTGGTAA
AA sequence Show only first row Show all	>Potri.002G186900.2 pacid=42779174 polypeptide=Potri.002G186900.2.p locus=Potri.002G186900 ID=Potri.002G186900.2.v4.1 annot-version=v4.1 MRRSFTLVNVLLLLALFGDAPWAIKCSLLCEQGNLAVIRPHSVTITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPTGRWLTGSFDLISHLTL WLDKDAVILGSTNSDDWPVIDPLPSYGRGRELPGRRHKSLIYGRNLTDVIITGDNGTIDGQGSIWWDWFRNQTLNYTRPHLVEFMNTTGVVISNLTFINS PFWTIHPVYCSQVIVQNVTILAPLDSPNTDGIDPDSSDDVCVEDCYVSTGDDIIAIKSGWDEYGMSYGRPSKNITIRRLVGQTTSAGIAIGSEMSGGVSE VHAENLRFYNSTTGIRIKTSPGRGGYVRNIYISNMSLTDVKTAISFTGRYGEHPDEYYDPTALPLIERITVEDVAGQNVKYAGLLEGIEGDTFLDICLLN INLSVTSKSPWNCSYIQGYSDTVSPEICEPLRERIFPDHYSDCYCLSHHLQSSSNQNRGGAWLSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	0	1
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	1.41	0.9117
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	1.41	0.9181
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	2.82	0.8608
					Potri.018G101800 [exp]	2.82	0.8691
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	3.46	0.8470
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	3.46	0.8955
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	3.46	0.8632	ACT6
AT2G41990			unknown protein		Potri.009G140600 [exp]	4.47	0.8581
AT4G24630			DHHC-type zinc finger family p...		Potri.007G077000 [exp]	5.19	0.8591
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	6.48	0.7917

Compare expression of checked genes

Potri.002G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.