Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01810 1353 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 129 / 2e-30 Sec23/Sec24 protein transport family protein (.1.2) AT2G21630 128 / 3e-30 Sec23/Sec24 protein transport family protein (.1) AT4G14160 122 / 2e-28 Sec23/Sec24 protein transport family protein (.1.2.3) AT1G05520 120 / 1e-27 Sec23/Sec24 protein transport family protein (.1) AT5G43670 92 / 5e-19 Sec23/Sec24 protein transport family protein (.1) AT2G27460 66 / 1e-10 sec23/sec24 transport family protein (.1) AT3G07100 53 / 1e-06 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 50 / 1e-05 CEF clone eighty-four (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112600 [exp] 1607 / 0 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 145 / 2e-35 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 139 / 7e-34 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 131 / 3e-31 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 100 / 2e-21 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 88 / 1e-17 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 78 / 1e-14 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 79 / 2e-14 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.010G211100 [exp] 70 / 6e-12 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007190 [exp] 1401 / 0 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 1397 / 0 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 142 / 2e-34 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 138 / 3e-33 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 136 / 1e-32 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 129 / 2e-30 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 95 / 8e-20 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 95 / 1e-19 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 80 / 4e-15 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 67 / 7e-11 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.002G187100.2 pacid=42776738 polypeptide=Potri.002G187100.2.p locus=Potri.002G187100 ID=Potri.002G187100.2.v4.1 annot-version=v4.1 ATGGCTAACCCACCTCAACCTTCCCTTGGGTACTCTGTTACTGCTGTTCCCTCAAACCCTGACTCATCAACCCCTCAACCAGAGAAAAATTCTGTTCCTC CTCCTACAATGTTACCTGGAGCTTCCCGATTTCCTCCTCCTAAATTGCACCAAGATCAGATCCCTTCCCCTTCGTTCCAGAACCCAAGGTTGTTATCACC TGCCAATGGGGTTAAAACTGGGAGCCCAGTTCCTCATTTAAGCACCCCTCCTGGTCCTCCTGTTTTTACGTCACCAGTCCGGCCTGCTGCTGTGCCTTTT CGGACTTCTCCTGCAACTCCTCAACCAGTTGCTTTCTCATCAGGCTCAACATTACCAACATCCTCGCCTCCCCATTTTTCAAATGGTTCCATTGAGTTGC AGCACCAAGTTCCCCTTGCTACAAATGACTCCACACCTTTCGAGGAATCATCATGTGCTTTGTTCTCTGCTCGCAAGGTGTTGAAGCAAAAGAAACTAGC AAATGTACCGAGTTTGGGCTTTGGGGCATTGTTTTCTCCTGGGGGAGAGATTTCTCCTGGTCCTCAAATAATACAGCGTGATCCTCACCGCTGCCACAAT TGTGGAGCTTATGCAAATCTTTATTGCAAGATTTTACTCGGTTCAGGCCAGTGGCAATGTGTAATTTGCCAGAAACTGAATGGAAGTGAAGGTGAATATG TAGCTCCAAGCAAAGAAGAACTTCGCAACTTGCCAGAACTTTCATCACCCATCATTGATTATATTCAAATTGGGAACAAGAGACCTGGTTTTATTCCAGT TTCTGATTCCAGAATGTCTGCACCCACTGTTCTTGTTATAGATGAGTGTTTAGATGAAACCCACCTGCAGCATTTACAAAGCTCTTTGCATGCATTTGTC GATTCACTCCCCCCTACAGCAAGAATTGGAATAATACTATATGGCCGTACAGTATCAGTTTATGATTTTTCAGAGGAATTAATGGCATCTGCTGATGTAC TTCCTGGTGACAAATCACCTACCCGAGAGTCCTTGAAAGCATTGATTTATGGAACTGGTGTGTACTTGTCGCCGATGCATGCTTCAAAGGAAGTGGCACA CAAAATATTCTCATCTTTGAGACCATTCGGATTGAACATTGCAGAATCTTCAAGAGACCGGTGCCTGGGTACTGCAGTTGAGGTTGCTCTGGCTATAATT CAAGGACCATCAGCAGAAATGTCTCGAGGCATAATTAAAAGGGCTGGAGGTAATAGCAGGATTATCGCGTGTGCTGGGGGACCAAATACATATGGCCCTG GATCAGTCCCGCATTCTTTTAGCCATCCAAATTATCCTCATATGGAAAAAACAGCATTGAAATGGATGGAGAATCTGGGTCGTGAAGCGCATAGACATAA TACAGTAGTTGATATTCTATGTGCTGGAACTTGCCCTGTTAGAATTCCAGTCCTGCAGCCTCTTGCAAAAGCTTCTGGAGGTGTTTTGGTTCTTCATGAT GACTTTGGAGAGGCCTTTGGTGTGAATTTGCAAAGGGCAGCTTCTAGGGCATCACGTTTCCATGGCTTGTTGGAGATTCGATGTTCTGATGATATTCTAA TTACTCAAGTTGTGGGTCCTGGTGAAGAGGCACATGTAGACACACATGAAACTTTTAAGAACAACAATGCTCTCTGCATTCAAATGCTAAGTGTTGAAGA AACACAGAGCTTTGCACTTTCTATGGAAACTAAAGAAGACATCAAAAGTGATTGTGTATTTTTCCAGTTTGCTGTTCGATACGCTAATGTTTATCAAGCT GATATTTCAAGAGTGGTTACTGTCAGGTTGCCAACTGTGGATAGTGTTTCAGCATATCTTGAAAGTGTTCAGGATGAAGTGGCTGCAATCCTCATGGCCA AGAGAACCCTCTTGCGAGCCAAAAACCATTCAGATGTCATGGATATGCGAGGAACAATAGATGAGAGAATTAAAGACATTGCTTTGAAATTTGGGTCCCT AGTTCCCAAGTCAAAGCTTCATCAATTTCCTAAAGAACTTTCTGCATTATCAGAGCTCCTTTTCCATCTTAGAAGGGGCCCGCTTTTGGGAAGCATTGTT GGTCATGAAGATGAGAGGTCCGTGTTGCGGAATTTGTTTTTGAATGCATCTTCTGATCTTTCACTCCGTATGGTAGCACCTCGTTGTCTAATGCACCGAG AAGGGGGCACTTTTGAGGAACTACCAGCTTATGACCTTGCGATGCAGTCTGATACAGCTGTTGTTCTTGACCATGGTACAGATGTCTTCATTTGGTTGGG TGCTGAGCTAGCTGCTGATGAAGGAAGAAGTGCAGCTGCTTTAGCAGCTTGCAGAACATTAGCTGAAGAAATCACTGAATTGCGGTTTCCAGCTCCTAGG ATCCTTGCATTCAAGGAGGGGAGCTCTCAAGCTAGATATTTTGTTTCTCGGCTGATTCCTGCACACAAGGATCCACCGTATGAACAGGAGGCAAGATTCC CGCAGCTTAGATCTCTGACAATAGAACAACGGATGAAGCTAAAAACCAGCTTTATTCACTTTGATGATCCAAGTTTCTGTGAGTGGATGCGTAGTTTGAA AGTGGTGCCCCCATAA
AA sequence Show only first row Show all	>Potri.002G187100.2 pacid=42776738 polypeptide=Potri.002G187100.2.p locus=Potri.002G187100 ID=Potri.002G187100.2.v4.1 annot-version=v4.1 MANPPQPSLGYSVTAVPSNPDSSTPQPEKNSVPPPTMLPGASRFPPPKLHQDQIPSPSFQNPRLLSPANGVKTGSPVPHLSTPPGPPVFTSPVRPAAVPF RTSPATPQPVAFSSGSTLPTSSPPHFSNGSIELQHQVPLATNDSTPFEESSCALFSARKVLKQKKLANVPSLGFGALFSPGGEISPGPQIIQRDPHRCHN CGAYANLYCKILLGSGQWQCVICQKLNGSEGEYVAPSKEELRNLPELSSPIIDYIQIGNKRPGFIPVSDSRMSAPTVLVIDECLDETHLQHLQSSLHAFV DSLPPTARIGIILYGRTVSVYDFSEELMASADVLPGDKSPTRESLKALIYGTGVYLSPMHASKEVAHKIFSSLRPFGLNIAESSRDRCLGTAVEVALAII QGPSAEMSRGIIKRAGGNSRIIACAGGPNTYGPGSVPHSFSHPNYPHMEKTALKWMENLGREAHRHNTVVDILCAGTCPVRIPVLQPLAKASGGVLVLHD DFGEAFGVNLQRAASRASRFHGLLEIRCSDDILITQVVGPGEEAHVDTHETFKNNNALCIQMLSVEETQSFALSMETKEDIKSDCVFFQFAVRYANVYQA DISRVVTVRLPTVDSVSAYLESVQDEVAAILMAKRTLLRAKNHSDVMDMRGTIDERIKDIALKFGSLVPKSKLHQFPKELSALSELLFHLRRGPLLGSIV GHEDERSVLRNLFLNASSDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEEITELRFPAPR ILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTIEQRMKLKTSFIHFDDPSFCEWMRSLKVVPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	0	1
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	1.41	0.9303
AT4G20325			unknown protein		Potri.006G280600 [exp]	1.41	0.9413
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	3.00	0.9257	HMGB906,ATHMG.1
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	3.16	0.9113	FIM1.1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	3.46	0.9159
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	4.24	0.9102
AT5G07900			Mitochondrial transcription te...		Potri.011G005100 [exp]	7.34	0.8897
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	7.81	0.8411
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	8.77	0.8891
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	9.16	0.8717

Compare expression of checked genes

Potri.002G187100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.