Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62130 685 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G26600 564 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G08490 62 / 2e-10 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112700 [exp] 850 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G003000 [exp] 619 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.013G002400 [exp] 610 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.009G066000 [exp] 60 / 1e-09 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038033 [exp] 691 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10009974 [exp] 690 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031445 [exp] 556 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10001514 [exp] 549 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031670 [exp] 62 / 3e-10 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Potri.002G187200.1 pacid=42779203 polypeptide=Potri.002G187200.1.p locus=Potri.002G187200 ID=Potri.002G187200.1.v4.1 annot-version=v4.1 ATGCAAGAAAACTCCAAAGATGCTCGAAACGGCGGCGACTCGTTGTCGACAACGCCAACGCAGGTCTCCAAAAAACCACGCGTCAGCTTCTCCATAACAG AACACGAAATCCACCATGAATTCTCTCACCACAACCCTAATGTAGCCCGAATTAACAACGGTAGCTTCGGTAGCTGCCCCGGATCCGTACTTGCTGCTCA AAAGAACTGGCAGCTCCAGTTCCTTCAACAACCTGACGACTTCTACTTCAACACTCTCCGTAAAGGAATTCTCCACTCACGTACTGTCATCAAAGACCTC ATCAATGCTGACGACGTCGACGAGATCTCCCTTGTCGATAACGCCACCACTGCCGCCGCCATCGTCCTTCAACAAATTGGCCGTGCCTTCGCTGAAGGTA ATTTTGCTAAAAACGATACCGTTTTAATGCTCCACTGTGCTTATCAAGCTGTTAAAAAATCGATTCAAGCTTACGTCACGCGTGCTGGGGGTTCTGTTAT CGAGATTCAGTTACCGTTTCCGGTTACTTCGAATGAGGAGATAATTTCGGAGTTTAAGAGAGGAATAGAGAAAGGCAAAGCTAACGGTAAAAAAATTAGG TTAGCGATAATTGATCATATAACGTCGATGCCGTGTGTTGTTATTCCGGTAAAAGAGTTGGTTAAAATTTGCAGAGAAGAAGGTGTGGATCAGGTTTTTG TTGATGCAGCTCATGCTATTGGTAGTGTTGAAATAAATGTTAAAGAAATCGGGGCTGATTTTTATGTCAGTAATTTGCATAAGTGGTTCTTTTGCCCCCC ATCGGTTGCTTTTCTGTATTGTAAGAAAGCAGCGAGTTTGGAATTTGATGTACACCATCCGGTTGTTTCACATGAGTATGGAAATGGATTGCCGATAGAG AGTGCGTGGATTGGGACTAGGGATTATAGCTCACAATTAGTGGTGCCGGCAGCTTTGGAGTTTGTTAATCGATTTGAGGATGGGATTCAGGGGATAATGA AGAGGAACCATGAGGAGGTTGTTAAGATGGGGAAAATGCTGGCCGAATCATGGGGGACAAATCTTGGTTCTTCACCGGAGATGTGTGCGGGAATGATCAT GGTTGGTCTGCCTTCGAGATTGCGTGTTTCAAGTGAAGATGATGCTTTGAGGTTAAGATCGCATTTGCGTGAGTGTCATGGGGTTGAGGTTCCGATACAT TATCAGGGTTTAAAAGATGGTGAGGAGGGAGTGAAAGATAAGGATGGGGTTATAACAGCGTATGCTAGGATTTCTCATCAGGTTTATAATAAGTCTGAGG ATTATTGCAAGCTTAGGGATGCTGTAAATCGTCTTTCTGAGAATCTACTGATTCGCAAAACGTTTTATCCAGAGTGA
AA sequence Show only first row Show all	>Potri.002G187200.1 pacid=42779203 polypeptide=Potri.002G187200.1.p locus=Potri.002G187200 ID=Potri.002G187200.1.v4.1 annot-version=v4.1 MQENSKDARNGGDSLSTTPTQVSKKPRVSFSITEHEIHHEFSHHNPNVARINNGSFGSCPGSVLAAQKNWQLQFLQQPDDFYFNTLRKGILHSRTVIKDL INADDVDEISLVDNATTAAAIVLQQIGRAFAEGNFAKNDTVLMLHCAYQAVKKSIQAYVTRAGGSVIEIQLPFPVTSNEEIISEFKRGIEKGKANGKKIR LAIIDHITSMPCVVIPVKELVKICREEGVDQVFVDAAHAIGSVEINVKEIGADFYVSNLHKWFFCPPSVAFLYCKKAASLEFDVHHPVVSHEYGNGLPIE SAWIGTRDYSSQLVVPAALEFVNRFEDGIQGIMKRNHEEVVKMGKMLAESWGTNLGSSPEMCAGMIMVGLPSRLRVSSEDDALRLRSHLRECHGVEVPIH YQGLKDGEEGVKDKDGVITAYARISHQVYNKSEDYCKLRDAVNRLSENLLIRKTFYPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.002G187200 [exp]	0	1
AT3G57280			Transmembrane proteins 14C (.1...		Potri.001G139800 [exp]	2.23	0.9094
AT5G61220			LYR family of Fe/S cluster bio...		Potri.009G079800 [exp]	6.63	0.9039
AT2G42080			Chaperone DnaJ-domain superfam...		Potri.016G045401 [exp]	7.74	0.9091
AT4G18740			Rho termination factor (.1.2.3...		Potri.011G069300 [exp]	9.69	0.9247
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	11.61	0.9120
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	14.14	0.8563
AT5G50860			Protein kinase superfamily pro...		Potri.012G103900 [exp]	17.29	0.8471
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	17.43	0.9131
AT5G24460			unknown protein		Potri.015G002500 [exp]	17.43	0.8979
AT1G45170			unknown protein		Potri.002G262700 [exp]	18.24	0.8885

Compare expression of checked genes

Potri.002G187200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.