Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48300 98 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003200 [exp] 100 / 6e-24 AT1G48300 125 / 2e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038034 [exp] 91 / 2e-20 AT1G48300 92 / 3e-21 unknown protein Lus10009975 [exp] 89 / 1e-19 AT1G48300 91 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G187300.1 pacid=42779862 polypeptide=Potri.002G187300.1.p locus=Potri.002G187300 ID=Potri.002G187300.1.v4.1 annot-version=v4.1 ATGGAGACTGCTCGCAATATTATTCCTCGGCCTGTTCTTTGCTTCCCTGGCACCAGAATTGCTACTCACCGTTTGAGCTTGCCTCCTAATGGTCTAGGTA CTGGAAAATGTGGAGTCCCATTTAGAAGCAAACGCTATGATCATCGTATTTTGAGTCGTGGATTTTCCGATTCTGGGCATTTAAAATACTATGTGTCGCC AGCGAGGTGTAGTGGAAAGAAAGAGAAGAGTAAAAAGAAGCAGCTCAAGTTGTTGAGAAGATTGTCCAGGGACTTGCCCATTTTTTCCTACGCGGTCTGT GGCGAAGAGGGTAACGGTAGTTTGATTGGTGAAGTCAAGGAGAAGATGATTTCGGAAGCAACAGAGATTTTACTAGCGGAATTGCAAAATCGGAGGTTAG AGCGAAAGGAACAGAAGAGAAAGAGAAGAGACGAGAGGGCAACGCTGATTAAAAATAGGCCCAGGTGTGACTCTGGATCTTCGTCGTCGTCGAGCTCTTC CTCTTCCGGGTCATCTTCACCTGAGTCAAGTGATAGTGATTGTAGTAGAGAGGTAGTTTCCATGAAACAGATGAGAAGCAAAGCTTTGAACCCTTTTATA GAGATTGAATCGGCAAAAGCAATTAAAGAAGCAACTCAAGAAGATCAGCACAGGGATACAGTATCAGGGGCTAAATCTAATGATTCAAGTCCTCAAAATC TCAGTGATGGCGTTCAGATCGGGGCGTCTGGGAGGAAGATTGAGATATGCATGGGTGGTAAGTGTAGGAAATTGGGAGCAGCTGCTCTGTTGGAAGAATT TGAAAGGAAGATCGGAATGGAGAGTGCTGTTGTTGGTTGCAAGTGCATGGGGAAATGCATGAAAGGTCCTAATGTCCGGGTTTTCAACTGTACTGTTGAA AATGAAGACATGAGAGTGGAGGATTCTATTAAACCCCCACTTAATCTTCTATGCATCGGAGTTGGTTTGAAGGATGTGGGTATCATTAGTCGTCAACTTC TGGGCAATGATGGCAAAGACAGGAATCATGCATGTCTGATGGCACCTTCATGA
AA sequence Show only first row Show all	>Potri.002G187300.1 pacid=42779862 polypeptide=Potri.002G187300.1.p locus=Potri.002G187300 ID=Potri.002G187300.1.v4.1 annot-version=v4.1 METARNIIPRPVLCFPGTRIATHRLSLPPNGLGTGKCGVPFRSKRYDHRILSRGFSDSGHLKYYVSPARCSGKKEKSKKKQLKLLRRLSRDLPIFSYAVC GEEGNGSLIGEVKEKMISEATEILLAELQNRRLERKEQKRKRRDERATLIKNRPRCDSGSSSSSSSSSSGSSSPESSDSDCSREVVSMKQMRSKALNPFI EIESAKAIKEATQEDQHRDTVSGAKSNDSSPQNLSDGVQIGASGRKIEICMGGKCRKLGAAALLEEFERKIGMESAVVGCKCMGKCMKGPNVRVFNCTVE NEDMRVEDSIKPPLNLLCIGVGLKDVGIISRQLLGNDGKDRNHACLMAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48300			unknown protein		Potri.002G187300 [exp]	0	1
AT1G34470			Protein of unknown function (D...		Potri.009G047400 [exp]	6.16	0.7623
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	15.23	0.7408
AT2G12400			unknown protein		Potri.006G060600 [exp]	16.97	0.7162
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	24.97	0.7344
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336766 [exp]	26.36	0.7343
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101600 [exp]	29.17	0.6865
AT3G56360			unknown protein		Potri.019G058000 [exp]	29.18	0.5790
AT3G55060			unknown protein		Potri.008G047200 [exp]	35.19	0.7252
AT5G01350			unknown protein		Potri.006G101901 [exp]	36.82	0.7326
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	37.20	0.7224

Compare expression of checked genes

Potri.002G187300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.