Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1859 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1855 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1829 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 1792 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 1701 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 1697 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 1522 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1477 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28860 1057 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1053 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 2268 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 2256 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 2096 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113000 [exp] 1886 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1858 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1778 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1628 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.017G081100 [exp] 1060 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1040 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009988 [exp] 1927 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1914 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 1847 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1810 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1764 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 1708 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010074 [exp] 1583 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1552 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004583 [exp] 1472 / 0 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10004520 [exp] 1168 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.002G187500.7 pacid=42779559 polypeptide=Potri.002G187500.7.p locus=Potri.002G187500 ID=Potri.002G187500.7.v4.1 annot-version=v4.1 ATGGCTGTCGAGAACGGGAGAAGTCGTGATAAGAGTATGGATGAGGCCAGCACATCAAAAAGCCAGGAGGTAGAGGAGAAAAGTTCTGCCGGAAATGGGG ACCAACAGAAGCAAGAGAAGAGCGAAGGAGATGAGGAAACTAAAACAGTTCCGTTTATCAAGCTCTTTTCATTTGCGGATTCTAAAGATATCTTTCTGAT GATCCTTGGGACGGTTGGCGCTATTGGAAATGGAGCATCCATGCCAATTATGTCAATACTGTTCGGAGATCTGATCAATTCTTTTGGAAAAAACCAGAAT AATAAAGATGTAGTGGATTTGGTTTCAAAGGTGTCTCTCAAATTTGTCTACTTGGGAGTTGGTTCTGCTGTAGGTTCATTTCTCCAGGTGGCTTGCTGGA TGGTCACAGGAGAGAGACAGGCTGCACGGATAAGGGGTACGTATTTGAAAACTATACTGAGACAAGATGTTGCCTTTTTCGACAAGGAAACAAACTCTGG AGAGGTTGTTGGTAGAATGTCTGGTGACACTGTTCTTATACAAGATGCTATGGGTGAAAAGGTCGGGAAATTTATACAGCTAGTATCAACATTCATTGGC GGCTTTATAATATCATTTATCAAAGGCTGGCTTCTTACTCTTGTCATGCTATCCTCCATTCCCCTGCTTGTGATAGCTGGTGCAGGATTGTCCATCATGA TAGCTAGGATGGCATCTCGTGGCCAAACTGCTTACAGTAAGGCAGCGTCTGTAGTAGAACAGACTATTGGCTCAATCAGAACTGTTGCATCATTCACTGG GGAGAAGCAAGCCATAAGTAATTACAAGAAGTTTCTTGTCACTGCTTATAACTCTGGTGTTCAAGAAGGCTTGGCTGCTGGAGTAGGTCTTGGCATTGTT ATGTTAGTAGTGTTCTGTAGCTATGCTTTGGCAGTATGGTTTGGTGGAAGGATGATTTTGGAAAAAGGATATACCGGGGGTGATGTGATTAATGTGATTG TTGCTGTGTTGACCGGTTCTATGTCTCTAGGGCAGGCATCTCCTTGTATGAGTGCATTTGCATCTGGTCAAGCTGCAGCTTATAAGATGTTTGAGGCTAT CAATAGAAAGCCAGAGATAGATGCCTCCGATACAAGGGGAAAGATATTGGATGACATCAGAGGAGATATAGAGTTGAGGGATGTATATTTCAATTATCCA GCCAGACCTGATGAGCAAATATTTTCTGGATTCTCTCTTTTCATCCCAAGTGGATCAACTGCAGCATTGGTTGGACAAAGTGGAAGCGGAAAGTCAACGG TGATCAGTCTGATAGAGAGATTCTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGCATTAACCTCAAAGAGTTTCAGCTCAAATGGATTCGGGAGAA AATTGGTCTTGTCAGCCAGGAACCTGTGCTGTTCACGTCCAGCATTAAGGATAACATTGCATATGGAAAGGATATGGCAACTACCGAAGAGATAAGAGCT GCAGCTGAACTTGCCAATGCTGCTAAATTCATCGATAAACTACCTCAGGGAATAGACACCATGGTTGGTGAACATGGAACTCAGCTGTCTGGTGGACAGA AACAGAGAATTGCAATTGCAAGAGCCATCCTGAAAGATCCGCGAATTTTACTTTTGGATGAAGCTACAAGCGCTCTTGATGCAGAATCTGAAAGGATAGT GCAGGAGGCATTAGACAGGATTATGGTGAATCGAACAACTGTAATTGTTGCCCACCGTTTGAGCACTGTGAGAAACGCAGATATGATTGCTGTTATTTAC CGTGGGAAGATGGTGGAGAAAGGTTCACATTCAGAACTGCTCAAGGATCCTGAAGGAGCTTACTCGCAGCTTATACGCTTACAAGAAGTGAACAAAGAGT CGGAACAAGAAGCAGATGACCAAAAGAAGTCAGATATTTCTACCGAGTCCTTAAGACATTCAAGTCAAAAAATTTCACTGAAACGGTCCATAAGTCGGGG ATCATCTGATTTTGGAAATAGCAGTCGCCGCTCGTTTTCAGTGACATTTGGTTTACCTACTGGATTCAATGCCCCTGATAATTACACGGAAGAATTAGAA GCTTCTCCACAGAAACAACAAACTCCAGATGTCCCAATCAGCCGCCTTGTGTATCTCAACAAGCCGGAGGTTCCAGTGCTGATTGCTGGAGCTATAGCTG CAATTATCAATGGGGTCATATTTCCGATATTTGGTATACTAATTTCCAGGGTGATTAAAACATTTTTTGAACCACCTCATGAATTGAGAAAGGATTCGAA GTTCTGGGCGTTGATGTTCATGACCCTTGGCCTGGCATCTTTTGTTGTGTATCCGTCACAAACATACTTATTTTCGGTGGCTGGTTGCAAATTAATCCAA AGGATCCGATCTATGTGTTTTGAGAAGATGGTTCACATGGAGGTTGGTTGGTTTGACGAGCCTGAGCACTCAAGTGGAGCAATTGGTGCTAGGCTCTCAG CAGATGCTGCAACAGTGCGTGGTCTGGTTGGAGATTCTCTTTCCCAGTTGGTTCAGAACATAGCATCAGCGGTAGCGGGTTTGGTCATTGCCTTTGTTGC ATGTTGGCAATTGGCATTTGTAATCCTTGTACTACTTCCTCTAATAGGACTCAATGGATTTATTCAAATGAAGTTCTTGAAAGGATTCAGTTCAGATGCA AAGAAAATGTATGAGGAAGCGAGCCAAGTTGCCAATGACGCTGTTGGCAGCATAAGAACTGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGCAACTAT ACAGAAAGAAATGTGAAGGCCCTATGAGGACAGGAATAAGGCAAGGGCTGATAAGTGGAGCAGGATTTGGAGTTTCTTTCTTCTTACTTTTTTCTGTCTA CGCAACTAGTTTCTATGTGGGAGCACAACTTGTCCAGCATGGGAAAACTACTTTTGCAGATGTTTTTCAAGTTTTCTTTGCTTTAACCATGGCAGCGATT GGGATTTCTCAATCAAGCTCCTTTGCCCCTGATTCCTCAAAAGCCAAGGCTGCAGCTGCTTCCATATTCTCCATTATAGACCGAAAGTCGCAGATTGATT CAAGTGATGAGTCGGGAACAACATTAGACAATGTGAAGGGAGAAATTGAACTTCGTCACATAGGCTTTAAGTATCCAGCTAGGCCAGACATTGAAATTTT CCGAGACCTCAGCTTAGCTATTCATTCTGGCAAGACTGTTGCCCTTGTTGGAGAAAGCGGAAGTGGGAAATCAACGGTGATCTCGTTATTGCAAAGGTTT TATGATCCCCATTCAGGCCATATAACTCTTGATGGAATTGACATTAAAAGTCTTCAACTTAAGTGGTTGAGGCAGCAAATGGGGCTTGTGAGCCAAGAAC CAGTTCTCTTCAATGAAACAATCCGCGCCAACATTGCATATGGAAAGGAAGGCGATGCAACGGAAGCGGAAATTCTAGCTGCGTCGGAGCTAGCAAATGC ACACAAGTTCATCAGTAGTTTGCAACAGGGGTACGATACCGTTGTAGGGGAGAGAGGAATCCAATTATCCGGCGGACAGAAACAAAGGGTGGCCATTGCT CGTGCCATAGTCAAAAGTCCCAAAATACTTCTGCTGGATGAGGCTACCAGTGCACTGGATGCCGAATCTGAAAGAGTGGTTCAAGATGCCCTGGACCGAG TAATGGTGAACAGGACTACGGTCGTCGTCGCCCACCGATTATCTACAATCAAGAACGCAGATGTTATTGCCGTGGTGAAAAATGGAGTTATCGTAGAGAA AGGCAAGCATGAGACTCTGATTCATATCAAAGATGGTTTTTATGCCTCCTTAGTGGCTCTTCACATGAGTGCCTCAACTTCTTGA
AA sequence Show only first row Show all	>Potri.002G187500.7 pacid=42779559 polypeptide=Potri.002G187500.7.p locus=Potri.002G187500 ID=Potri.002G187500.7.v4.1 annot-version=v4.1 MAVENGRSRDKSMDEASTSKSQEVEEKSSAGNGDQQKQEKSEGDEETKTVPFIKLFSFADSKDIFLMILGTVGAIGNGASMPIMSILFGDLINSFGKNQN NKDVVDLVSKVSLKFVYLGVGSAVGSFLQVACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFIG GFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYSKAASVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIV MLVVFCSYALAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEAINRKPEIDASDTRGKILDDIRGDIELRDVYFNYP ARPDEQIFSGFSLFIPSGSTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNIAYGKDMATTEEIRA AAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIY RGKMVEKGSHSELLKDPEGAYSQLIRLQEVNKESEQEADDQKKSDISTESLRHSSQKISLKRSISRGSSDFGNSSRRSFSVTFGLPTGFNAPDNYTEELE ASPQKQQTPDVPISRLVYLNKPEVPVLIAGAIAAIINGVIFPIFGILISRVIKTFFEPPHELRKDSKFWALMFMTLGLASFVVYPSQTYLFSVAGCKLIQ RIRSMCFEKMVHMEVGWFDEPEHSSGAIGARLSADAATVRGLVGDSLSQLVQNIASAVAGLVIAFVACWQLAFVILVLLPLIGLNGFIQMKFLKGFSSDA KKMYEEASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPMRTGIRQGLISGAGFGVSFFLLFSVYATSFYVGAQLVQHGKTTFADVFQVFFALTMAAI GISQSSSFAPDSSKAKAAAASIFSIIDRKSQIDSSDESGTTLDNVKGEIELRHIGFKYPARPDIEIFRDLSLAIHSGKTVALVGESGSGKSTVISLLQRF YDPHSGHITLDGIDIKSLQLKWLRQQMGLVSQEPVLFNETIRANIAYGKEGDATEAEILAASELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIA RAIVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLIHIKDGFYASLVALHMSASTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	1.73	0.8034	Pt-CAT3.3,PtrCAT3
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	2.44	0.8122	STGA1.3
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	2.44	0.7874	Pt-VHA2.2
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	4.00	0.8107
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	6.70	0.7875
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	7.07	0.7746
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	10.00	0.7976
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	11.53	0.7853
					Potri.010G189401 [exp]	11.66	0.7298
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	12.00	0.7691

Compare expression of checked genes

Potri.002G187500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.