Plant FIBer expression Database

Potri.002G187700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47010 690 / 0 unknown protein
AT1G17030 590 / 0 unknown protein
AT4G09965 100 / 8e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G062000
[exp]
625 / 0 AT1G17030 648 / 0.0 unknown protein
Potri.019G076900
[exp]
602 / 0 AT2G47010 587 / 0.0 unknown protein
Potri.001G381400
[exp]
595 / 0 AT1G17030 706 / 0.0 unknown protein
Potri.001G381600
[exp]
581 / 0 AT1G17030 698 / 0.0 unknown protein
Potri.001G382000
[exp]
322 / 3e-107 AT1G17030 389 / 1e-133 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007453
[exp]
704 / 0 AT2G47010 653 / 0.0 unknown protein
Lus10009978
[exp]
668 / 0 AT2G47010 647 / 0.0 unknown protein
Lus10000888
[exp]
360 / 2e-120 AT2G47010 320 / 7e-105 unknown protein
Lus10024442
[exp]
227 / 3e-71 AT1G17030 231 / 4e-73 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G187700.1 pacid=42779532 polypeptide=Potri.002G187700.1.p locus=Potri.002G187700 ID=Potri.002G187700.1.v4.1 annot-version=v4.1
ATGGCCATGGAAACCCATTTGCGTGTTGTGTTTTTCTTGGTAAATGTGGTTGTGCTGGGTGTTTCTGGCGCAGGAGGAGAAACAGCTGTTGGAGACCCGG
GAATGAGAAGGGATGGTTTGAGAGTGGCCTTTGAAGCTTGGAATTTCTGCAATGAAGTTGGCCAAGAAGCTCCTGGCATGGGTAGCCCCAGAGCAGCTGA
TTGCTTTGACCTCTCAAGTAAGAACAAGCACCGTAGAAGGAAACACGCAGTATTGAAGAGTTCTTTTCTGAAACACCAGGTAAGTGAAGCTGATAACAAA
CTCGGGGTAGGACAGCCTTTCCCAGGTTTGGCCCCAGGAGCCATAAACAATACCGACCTTTATGCAATGCAGAAGGAGCTATACCTGGGTTCATTATGTC
AAGTTGAGGATACCCCGAATCCATGGCAGTTTTGGATGGTCATGCTTAAAAATGGAAACTATGACACAACTTCCGGTTTGTGTCCAAGGAATGGGAAAAA
GGCCCCTCCTTTTAGTCCAGGAAGGTTTCCTTGTTTTGGAAAGGGTTGTATGAATCAACCCATGTTGTATCATCAGCAGACTAAGCTTTCGGATGGTGGT
ATAATGAGAGGAAGTTTCAATGGGACATATGATTTGGGTTCTGACATTGGAAGTGGACTTGATGGAATCTCTTTTTATGAAGTGGTTTGGGAAAAAACAG
TTAGTAATGGAAGCTGGGTCTTTAGCCACAAGCTCAAGACTTCAAAGAAGTACCCATGGCTGATGCTGTACCTCAGAGCTGATGCAACTACAGGATTTTC
TGGAGGGTATCACTATGACACAAGAGGAATGCTCAAAATTCTTCCAGAGTCACCTAATTTCAAGGTCAAAGTGACTTTGGATGTGAAACAAGGGGGAGGA
CCCAAGAGCCAGTTCTATTTGATAGATATTGGGAGCTGTTGGAAGAACAATGGTGCTCCATGCGATGGAGATGTGCTTACCGACATAACCAGATACAGTG
AGATGATTATCAATCCTGAAACTCCAGCTTGGTGCAGTCCCACAAATCTAGGAAACTGCCCACCATACCACGTTACTCCAAACAACACAAAAATTTACAG
AAATGATACAGCTAACTTCCCGTATGGGGCGTATCACTACTACTGTGCTCCAGAGAATGCTCAATTTTTAGAGAAACCTGTCAGCACTTGTGATCCCTAC
AGCAATCCTCAGGCACAAGAGCTAGTTCAGTTGCTGCCTCATCCTATATGGGCTGACTATGGCTATCCAACAAAACAAGGGGATGGTTGGGTTGGGGATG
CCAGAACTTGGGAGCTTGATGTGGGTGGGCTTGCAAGTAGACTTTACTTCTATCAGGATCCAGGTACCCCTCCTGCTAGAAGAATATGGAGATCCATCGA
CATGGGTACTGAGATTTTTGTTAGCGACAAAGATGAAGTAGCGGAGTGGACTATTAGTGATTTTGATGTTACTTTCACATAA
AA sequence
>Potri.002G187700.1 pacid=42779532 polypeptide=Potri.002G187700.1.p locus=Potri.002G187700 ID=Potri.002G187700.1.v4.1 annot-version=v4.1
MAMETHLRVVFFLVNVVVLGVSGAGGETAVGDPGMRRDGLRVAFEAWNFCNEVGQEAPGMGSPRAADCFDLSSKNKHRRRKHAVLKSSFLKHQVSEADNK
LGVGQPFPGLAPGAINNTDLYAMQKELYLGSLCQVEDTPNPWQFWMVMLKNGNYDTTSGLCPRNGKKAPPFSPGRFPCFGKGCMNQPMLYHQQTKLSDGG
IMRGSFNGTYDLGSDIGSGLDGISFYEVVWEKTVSNGSWVFSHKLKTSKKYPWLMLYLRADATTGFSGGYHYDTRGMLKILPESPNFKVKVTLDVKQGGG
PKSQFYLIDIGSCWKNNGAPCDGDVLTDITRYSEMIINPETPAWCSPTNLGNCPPYHVTPNNTKIYRNDTANFPYGAYHYYCAPENAQFLEKPVSTCDPY
SNPQAQELVQLLPHPIWADYGYPTKQGDGWVGDARTWELDVGGLASRLYFYQDPGTPPARRIWRSIDMGTEIFVSDKDEVAEWTISDFDVTFT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47010 unknown protein Potri.002G187700
[exp]
0 1
Potri.005G070800
[exp]
3.74 0.7049
AT3G12530 PSF2 PSF2 (.1.2) Potri.010G203600
[exp]
10.44 0.7130
AT1G12790 unknown protein Potri.001G377100
[exp]
14.10 0.5680
AT5G13840 FZR3 FIZZY-related 3 (.1.2) Potri.008G057500
[exp]
19.28 0.6794
AT1G16520 unknown protein Potri.007G066900
[exp]
24.91 0.6776
AT3G13750 BGAL1 beta-galactosidase 1, beta gal... Potri.006G144500
[exp]
27.16 0.6554
AT1G68585 unknown protein Potri.008G119300
[exp]
28.21 0.6858
AT4G00840 DHHC-type zinc finger family p... Potri.014G104000
[exp]
28.28 0.6802
AT5G56270 WRKY ATWRKY2, WRKY2,... ARABIDOPSIS THALIANA WRKY DNA-... Potri.011G169300
[exp]
28.37 0.6506 WRKY2.1
AT5G56350 Pyruvate kinase family protein... Potri.003G223100
[exp]
32.15 0.6255

Potri.002G187700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.