Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47020 379 / 5e-130 Peptide chain release factor 1 (.1.2) AT3G62910 143 / 2e-38 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT1G56350 107 / 3e-25 Peptide chain release factor 2 (.1) AT5G36170 71 / 4e-13 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G33330 45 / 5e-05 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114000 [exp] 446 / 6e-156 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.014G133400 [exp] 144 / 7e-39 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.013G009200 [exp] 103 / 4e-24 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 76 / 1e-14 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.019G063800 [exp] 42 / 0.0004 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038039 [exp] 401 / 3e-138 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10009980 [exp] 399 / 2e-137 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 151 / 1e-41 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 151 / 2e-41 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10010922 [exp] 104 / 3e-24 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 102 / 1e-23 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 67 / 5e-12 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 61 / 4e-10 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF00472 [poplar] [flax] RF-1 RF-1 domain CL0337 [poplar] [flax] PF03462 [poplar] [flax] PCRF PCRF domain
Representative CDS sequence Show only first row Show all	>Potri.002G188200.2 pacid=42779179 polypeptide=Potri.002G188202.1.p locus=Potri.002G188200 ID=Potri.002G188200.2.v4.1 annot-version=v4.1 ATGGAACAAAGACTATCACGAAGGAGTGCTTGTCTTCCAGAAGCCTCACCGACTGAATTTTCGAGGGCGAATAAAGAGCTCCGGAAACTCAGGGGCTCCA TGGACCTTATAACATACCCCAGGACCAAACAGAAGGAGATTGATGGTCTGAGATCGATGATGGCTGAATGCCCAGAAGATAAAGACGTGCTTGATATGGC AAACGAGGAATTGATTCGAGCCATGGAAGAAGAGAAAAGACTGCAGAATTTGTTGCTGAAGTCATTACTTCCCAAGGATGATGCTGATGAGAGGGACTAC ATTTTGGAGGTGGGAGCAGGAACTGGAGGGGAAGAGGCTTCTTTATTTGCGATGGATATATTCAAGATGCGTGAGAGATTCTCGCAGAAGAATGATTGGA AATTTGAAGCGGTTGATATAATGGAGTCTGATTTGAAAGGATACAAGGAAGCTAGTGCGGCAATCTCAGGAGCTGATGTTTTTGGGAAACTCAAATTTGA GAGTGGAATTCACAGAGTTCAGCGTGTTCCAGTGACAGAGAAATCGGGGTGTGTTCACATGAGTGCTGTGTCTTTTGCTATCCTTCCTCAAGCTGATGAG ATGCTAAACTCTAGCATGGTGCATCATCACGCTGTCCTCTATAACTGGCAATTATGCTCTTTGGTCATTATAGTATTTGGAAGTATCAATACATCTCATT TCTACGTTCAATTAAGGAATGAAGAATTGAGAATTGGCGCTTACAGGTCTGGTGGTTCTGGTGGCCAGCATGCAAATACCACCAACAGTGCTGTTAGAAT AACTCATCTTCTGACCAGGAAAACTGTTTCCGTACAAGATGAACGATCCCAGCATCTGCCCTTTAAGGTGCTATGTGCAAAGCTGTATGAAATGGAACGG TCAAGTATTCAAATGAGTCGATCAAGACTTCGTTCAGAGCGAGCGAGCATTATTTGTCATCGGCTTTTGACTGGGTTGGCCGGGTTAATTTTTTTTTTAA AAAAATCAAACGATGTCGTTTTAATAAAAAACAAAAGTCAACGGGTTACAACTAGGTTTTTGACCGGGTCTTGTCGGGTCGCCAGGTTAACCAGGTTATA TAAGGGCGAGAGTCTGGATGTCTTCATCGATGCTTTTCTTCTACAGCAGGAAATGGATCTCTTCATAGGCCGTTATATATAG
AA sequence Show only first row Show all	>Potri.002G188200.2 pacid=42779179 polypeptide=Potri.002G188202.1.p locus=Potri.002G188200 ID=Potri.002G188200.2.v4.1 annot-version=v4.1 MEQRLSRRSACLPEASPTEFSRANKELRKLRGSMDLITYPRTKQKEIDGLRSMMAECPEDKDVLDMANEELIRAMEEEKRLQNLLLKSLLPKDDADERDY ILEVGAGTGGEEASLFAMDIFKMRERFSQKNDWKFEAVDIMESDLKGYKEASAAISGADVFGKLKFESGIHRVQRVPVTEKSGCVHMSAVSFAILPQADE MLNSSMVHHHAVLYNWQLCSLVIIVFGSINTSHFYVQLRNEELRIGAYRSGGSGGQHANTTNSAVRITHLLTRKTVSVQDERSQHLPFKVLCAKLYEMER SSIQMSRSRLRSERASIICHRLLTGLAGLIFFLKKSNDVVLIKNKSQRVTTRFLTGSCRVARLTRLYKGESLDVFIDAFLLQQEMDLFIGRYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47020			Peptide chain release factor 1...		Potri.002G188200 [exp]	0	1
AT1G62770			Plant invertase/pectin methyle...		Potri.001G119200 [exp]	10.24	0.9428
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.008G183000 [exp]	13.41	0.9353
AT4G19160			unknown protein		Potri.003G033300 [exp]	16.12	0.8712
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.005G002800 [exp]	19.97	0.8903
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.004G184600 [exp]	21.07	0.9429
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.017G002600 [exp]	22.44	0.9310
					Potri.004G184650 [exp]	23.23	0.9439
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G007866 [exp]	34.92	0.9266
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	37.81	0.8671
AT2G31130			unknown protein		Potri.011G065100 [exp]	38.72	0.9223

Compare expression of checked genes

Potri.002G188200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.