Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62190 172 / 3e-56 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G22360 45 / 3e-06 DNAJ heat shock family protein (.1) AT3G17830 45 / 3e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 42 / 3e-05 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G59725 42 / 6e-05 DNAJ heat shock family protein (.1) AT1G80030 41 / 0.0001 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT5G49060 39 / 0.0005 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031800 [exp] 45 / 4e-06 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.009G131800 [exp] 41 / 2e-05 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 42 / 3e-05 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 41 / 0.0001 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 40 / 0.0001 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.010G035000 [exp] 40 / 0.0002 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 39 / 0.0003 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009981 [exp] 182 / 5e-60 AT3G62190 139 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10038040 [exp] 148 / 3e-45 AT3G62190 110 / 2e-30 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10011484 [exp] 49 / 3e-07 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023122 [exp] 48 / 6e-07 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10000631 [exp] 45 / 6e-06 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 44 / 1e-05 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 44 / 1e-05 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10023148 [exp] 44 / 2e-05 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 40 / 0.0002 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 39 / 0.0005 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.002G188300.1 pacid=42779194 polypeptide=Potri.002G188300.1.p locus=Potri.002G188300 ID=Potri.002G188300.1.v4.1 annot-version=v4.1 ATGCAGGGTGATGAGGCCAAGGTCTTGCTAGGCTTCCCTCCCAATTCCCGCCCCACTCTCTCTCAGGTTAAAGCTGCATACAGAAAGAAAGTATGGGAAT CTCATCCTGACCTCTTTCCTCTTCATGAAAAGCCCGGTGCCGAGTCCAAGTTTAAGTTGATTTCAGAAGCTTACACTTATTTGCAGACCGGTGCAAAAGG AGAAGATTCAGCTTCAGCCACATATGCTCGAGTTGTGAGGACTGGAGTGCCAAGAGCGCATGGTGGAAGAAGCAATCGTGCTCTGATTCAGATCCCTTTC CTTTTTATTATTCTGGGAACTGTTGGACTGGGGGGGTTAAATGCCACCAGGGCTTACAAAAAGCAGAAAGAGGCGCATCCTTCTCACAACCCTTTTCTTC CGTGA
AA sequence Show only first row Show all	>Potri.002G188300.1 pacid=42779194 polypeptide=Potri.002G188300.1.p locus=Potri.002G188300 ID=Potri.002G188300.1.v4.1 annot-version=v4.1 MQGDEAKVLLGFPPNSRPTLSQVKAAYRKKVWESHPDLFPLHEKPGAESKFKLISEAYTYLQTGAKGEDSASATYARVVRTGVPRAHGGRSNRALIQIPF LFIILGTVGLGGLNATRAYKKQKEAHPSHNPFLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	0	1
AT2G06000			Pentatricopeptide repeat (PPR)...		Potri.006G141800 [exp]	2.00	0.8397
AT1G15900			unknown protein		Potri.001G046900 [exp]	7.48	0.8276
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.016G046600 [exp]	8.06	0.8140
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	11.66	0.7934
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	19.49	0.7679
AT5G64160			unknown protein		Potri.001G206032 [exp]	21.49	0.7937
AT3G53340	CCAAT	NF-YB10	"nuclear factor Y, subunit B10...		Potri.016G085000 [exp]	23.87	0.7419
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.011G085000 [exp]	24.61	0.8056	LCOSC2.5
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	27.92	0.7795
					Potri.006G250550 [exp]	29.49	0.7537

Compare expression of checked genes

Potri.002G188300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.