Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17450 960 / 0 hAT dimerisation domain-containing protein (.1) AT4G15020 341 / 2e-104 hAT transposon superfamily (.1.2) AT3G22220 327 / 5e-99 hAT transposon superfamily (.1.2) AT1G79740 286 / 5e-85 hAT transposon superfamily (.1) AT3G13020 250 / 2e-72 hAT transposon superfamily protein (.1) AT3G13030 231 / 5e-66 hAT transposon superfamily protein (.1.2.3) AT3G13010 186 / 5e-50 hAT transposon superfamily protein (.1) AT5G33406 183 / 2e-49 hAT dimerisation domain-containing protein / transposase-related (.1) AT1G43260 166 / 1e-45 hAT transposon superfamily protein (.1) AT1G36095 98 / 5e-22 DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114100 [exp] 1687 / 0 AT3G17450 945 / 0.0 hAT dimerisation domain-containing protein (.1) Potri.001G116600 [exp] 51 / 3e-06 AT1G62870 1017 / 0.0 unknown protein Potri.003G115900 [exp] 45 / 0.0002 AT1G62870 1028 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000517 [exp] 52 / 2e-07 AT4G15020 122 / 8e-33 hAT transposon superfamily (.1.2) Lus10016942 [exp] 50 / 2e-06 AT3G17450 51 / 1e-07 hAT dimerisation domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF04937 [poplar] [flax] DUF659 Protein of unknown function (DUF 659) CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.002G188400.1 pacid=42779168 polypeptide=Potri.002G188450.1.p locus=Potri.002G188400 ID=Potri.002G188400.1.v4.1 annot-version=v4.1 ATGTTTGAAGAAATGGCCCCACTTCGATCCTCAGGATATATTGATCCTGGATGGGAACATGGCATTGCTCAAGATGAAAGAAAAAAGAAGGTCAAATGCA ACTACTGCGGGAAAATAGTTAGTGGTGGAATATTCAGATTGAAACAACATTTAGCTAGAATGTCTGGTGAAGTTACTCATTGTGGTAAGGTTCCTGAGGA AGTATGCTTCAATATGAGAAAAAACCTGGAAGGATGCCGTTCAGGTCGAAAGCGAAGGCAAGCTGAATTTGAACAGGCATCTTTAGCTTTCCACTCTAGT GAGTATAATGACATGGAGGAAGCTTCCTGCAGTTACAAACAAAAAGGCAAAAAGGTGGTGGGTGACAAGAACTTGGTTATAAGGTTTGCTTCTCTTCGAT CCTTAGGATATGTGGACCCGGGCTGGGAACATTGTATTGCTCAAGATGAAAAGAAGAAAAGAGTGAAGTGCAATTATTGTGAGAGAATTATTAGTGGAGG CATCAATCGCTTTAAACAACATCTGGCTAGGATCCCTGGGGAAGTTGCCTATTGTGACAAGGCACCTGAGGAGGTGTACCTTAGAATCAAGGAGAACATG AAATGGCACCGTACTGGAAGAAGGAATCGGAAACCTGAATCTAAAGAGATATCCACTTTCTATACCAACTCAGATAACGAGGATGAAGAGGAGGAGCAAG AGGGAGGGTTGTTGCAATATTCAAGTAAGGATTTGCTGGCCATTGATGATAAAATTTCAGACAATGACATCAGAAATAATATCAAGGGGAGGTCCCCTGG TAGTAGCAGCAACGGTGCTGAACCACCAATGAAAAGATCAAGATTGGATTCAGTGTTTTTGAAGTCTCTTAAAAACCAAACATCATCGCACTACAGGCAA ACAAAAGCAAGGATGGGTTTTGAGAAGAAAGCTCTAAAGGAAGTGATCTCTTCCATCTGCAAATTCTTTTATCATGCAGGAATCCCTTCAAATGCAGCAA ATTCCCCATATTTCCTCAAAATGCTGGAGTTGGTTGGCCAATATGGGCCTGGTCTGCAGGGACCTTCAAGCCAACTACTATCTGGTCGGTTTCTTCAGGA TGAGATCATTACAATAAAAGAATATCTTGAAGAGTTTAAGGCATCTTGGACAATTACTGGCTGTTCTATTGTTGCTGATAGTTGGAACGATCTCCAGGGT AGGACATCAATTAACCTTTTGGCCTGTTGTCCCCGAGGTGCATACTTTGTTTCTTCTATTGATGCCACTGATATGATCGAAGATGCCGCAAGCCTTTTCA AGTTGTTGGACAAGGTGGTGGAAGAGATTGGTGAGGAAAATGTTGTTCAGGTAATCACTAAAAACACTGCCAGTTTTAAGACTGCTGGGAAGATGCTTGA AGAGAAAAGGAGAAATTTATTTTGGACACCATGTGCTATCCATTGCATTGATCAAATGGTAGAGGACTTTTTGAATATAAAATGGGTAGGAGAGTGCGTA GATAAGGCTAAAAAAGTTACAAGGTTTATTTACAACAATACTTGGTTGTTGAATTATATGAAAAAAGAATTCACAAAGGGACAAGAACTTCTCAGGCCAG CTGTTACTAAGTTTGGCACTGCATTCTTCACTTTACAAAGTTTGTTGGACCAAAGGGTTGGTCTTAAGAGAATGTTCCAATCAAACAAATGGATATCTTC CCGATTTCCCAAATCAGATGATGGTAGAGAAGTTGAAAAAATTGTCTTAAATGCCACATTCTGGAAGAAGGTGCAGCACGTGAAAAAATCCTTAGAACCG GTTGCGCTTGTTCTTCAGAAGATAGATGGTGATGAAACCCGATCAATAGCATATATATATAATGACATGTGCAGAGCTAAACATGCAATTAAAATTATTC ATGGGGATGATGCACGGAAATATGGACCTTTCTGGACTGTGATAGAAAACCAATGGAGCTCTCTGTTTCACCACCCACTTTACGTGGCTGCTTACTTTCT AAATCCATCTTACCGCTATCGACCTGATTTCCTATTGAATCCTGAGGTTGTTCGTGGTCTAAATGAATGTATTGTTCGACTGGAAGTTGACAATGGCAAA AGAATTTCTGCATCCATGCAGATCCCTGATTTTGTGTCAGCGAAAGCTGATTTTGGAACTGATTTGGCTATTAGTACTAGAATGGAGCTTGATCCAGCTG CATGGTGGCAACAACATGGGATAAGTTGCTTAGAGCTTCAACGAATTGCCATTCGTATACTAAGCCAGACATGCTCATCTCTCATATGTGAACACACTTG GAGTATATATGATCAAGTTCATAGTAAAAGGCATAGTACTGCATCCCGGAAGAGATGGAACGAGCTTACCTTTGTCCACTATAATTTGCGTCTAAGAGAA CGCCAACTAGGAAGAAAGCCTGGTGATGTGGTCTCATTTGACAACTTAATTACTGAAAACATACTGGATGACTGGCTTGTAGAGTCAGAGAAACAAACCA TGCAAGAAGATGAGGAGATCCTTTATAATGAGATGGAACAATTTGATGGAGATGAAATGGATGAGAATGACCATCAAGAAAAGAGACCTGCAGATATGGT GACATTGGCAGGGGTACTTGAGCCTTTGGATGTTATTCCTGCTGCCGGAGGAGTTACCACTGATGATGATGGTCTTGATTTTCTTGATGATGATTTGACA GATTAG
AA sequence Show only first row Show all	>Potri.002G188400.1 pacid=42779168 polypeptide=Potri.002G188450.1.p locus=Potri.002G188400 ID=Potri.002G188400.1.v4.1 annot-version=v4.1 MFEEMAPLRSSGYIDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCGKVPEEVCFNMRKNLEGCRSGRKRRQAEFEQASLAFHSS EYNDMEEASCSYKQKGKKVVGDKNLVIRFASLRSLGYVDPGWEHCIAQDEKKKRVKCNYCERIISGGINRFKQHLARIPGEVAYCDKAPEEVYLRIKENM KWHRTGRRNRKPESKEISTFYTNSDNEDEEEEQEGGLLQYSSKDLLAIDDKISDNDIRNNIKGRSPGSSSNGAEPPMKRSRLDSVFLKSLKNQTSSHYRQ TKARMGFEKKALKEVISSICKFFYHAGIPSNAANSPYFLKMLELVGQYGPGLQGPSSQLLSGRFLQDEIITIKEYLEEFKASWTITGCSIVADSWNDLQG RTSINLLACCPRGAYFVSSIDATDMIEDAASLFKLLDKVVEEIGEENVVQVITKNTASFKTAGKMLEEKRRNLFWTPCAIHCIDQMVEDFLNIKWVGECV DKAKKVTRFIYNNTWLLNYMKKEFTKGQELLRPAVTKFGTAFFTLQSLLDQRVGLKRMFQSNKWISSRFPKSDDGREVEKIVLNATFWKKVQHVKKSLEP VALVLQKIDGDETRSIAYIYNDMCRAKHAIKIIHGDDARKYGPFWTVIENQWSSLFHHPLYVAAYFLNPSYRYRPDFLLNPEVVRGLNECIVRLEVDNGK RISASMQIPDFVSAKADFGTDLAISTRMELDPAAWWQQHGISCLELQRIAIRILSQTCSSLICEHTWSIYDQVHSKRHSTASRKRWNELTFVHYNLRLRE RQLGRKPGDVVSFDNLITENILDDWLVESEKQTMQEDEEILYNEMEQFDGDEMDENDHQEKRPADMVTLAGVLEPLDVIPAAGGVTTDDDGLDFLDDDLT D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	2.23	0.8702
AT5G22450			unknown protein		Potri.004G203500 [exp]	2.44	0.8687
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	2.44	0.8651
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	2.82	0.8600
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	5.91	0.8574
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	6.00	0.8369
					Potri.007G113400 [exp]	7.00	0.8413
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G027000 [exp]	8.12	0.8047
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	8.48	0.8537
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	8.77	0.8347

Compare expression of checked genes

Potri.002G188400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.