Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 973 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 956 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 258 / 7e-72 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 240 / 7e-66 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 127 / 4e-34 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT3G15270 129 / 6e-34 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G53160 123 / 3e-32 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G69170 129 / 7e-32 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 126 / 2e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT5G43270 127 / 3e-31 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114300 [exp] 1616 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.008G098600 [exp] 1043 / 0 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 1000 / 0 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.005G258700 [exp] 288 / 6e-82 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 283 / 2e-80 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.001G398200 [exp] 130 / 3e-34 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.004G046700 [exp] 128 / 3e-34 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.014G057800 [exp] 134 / 1e-33 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.011G116800 [exp] 129 / 2e-33 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 1077 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 1051 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 810 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 637 / 0 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10016275 [exp] 129 / 1e-32 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10005548 [exp] 123 / 6e-32 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10012020 [exp] 129 / 2e-31 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 125 / 2e-31 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 125 / 2e-31 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10028181 [exp] 126 / 3e-31 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.002G188700.4 pacid=42776760 polypeptide=Potri.002G188700.4.p locus=Potri.002G188700 ID=Potri.002G188700.4.v4.1 annot-version=v4.1 ATGGAGGCTAGATTTGGAGGGGAACCTCATCATTTCTATGCTATGGGCCCAACTGATATGCGGGCAGTAGGGAAGAGAGGTTTAGAATGGGATTTGAATG ATTGGAAATGGGATGGTGATCTTTTTATTGCTAGTCCTTTGAATCCGGTACCATCAACCAGCGTCAGTAGGCCATTTTTCCCTCTTGGGGTTGGGACAGG AGTTCCGGCCACTGGGAATTCGTCCAACAGTTCATCTTCATGCTCCGATGAAGTGAATCTGGGAGTTGAGAAAGGAAAAAGGGAATTGGAGAAAAGGAGA AGGGTGGTTGTCATTGACGACGACAATTTGAATGATCAGGAAACTGGTGGTCTTAGTTTAAAGCTTGGTGGTCAAAGGGATGTGGGGAATTGGGAAGGAA GCAGCGGGAAGAAGACTAAATTGGTTGGGGGTGGCTTGAGCCGGGCGGTTTGTCAGGTGGAGGATTGCGGTGTTGATCTGAGTAATGCCAAGGACTATCA CAGGCGGCATAAGGTTTGTGAGATGCATTCCAAGGCTAGCAAAGCTCTCGTTGGAAACGTTATGCAGCGTTTCTGTCAGCAGTGCAGTAGGTTTCATGTC CTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGACGTCTGGCTGGCCACAATAAAAGGAGAAGGAAGACTAATCCTGATACTGTTGGTAATGGAA GTTCGATGAATGATGATCAGAACAGTGGCTATCTGTTGATAAGTCTCTTGAGGATACTGTCAAACATGCATTCCAATAGATCAGACGAAACAACTGATCA GGATCTGTTAACTCATCTTTTAAGGAGCCTTGCAAGCCATAGTGTTGAACATGGAGGAAGAAACATGTTTGGACCATTGCAGGAACCTCGAGATTTGAGC ACATCATTTGGAAATTCAGAGGTAGTCTCAACTTTACTTTCAAATGGTGAAGGCCCTTCAAATTTAAAACAGCATCTGACAGTACCTGTGTCTGGAATGC CTCAGCAAGTTATGCCTGTGCATGATGCATATGGTGCAAATATACAGACCACATCTTCCTTGAAACCTAGCATTCCAAACAACTTTGCAGTGTATTCAGA AGTTCGAGAGAGTACAGCGGGGCAGGTCAAGATGAACAATTTTGATTTGAATGACATTTGTGTTGACTCAGATGATGGCACTGAAGATATAGAGAGATCA CCTGCTCCTGTGAATGCAAGGACTAGCTCCCTTGATTGCCCTTCATGGGTACAACAAGACTCCCATCAGTCAAGTCCTCCTCAGACCAGCAGAAATTCAG ATTCAGCTTCCGCACAGTCACCTTCTAGTTCCAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTTAAATTATTTGGGAAAGAACCAAATGATTT TCCTCTTGTCCTGCGAGCCCAGATTCTGGATTGGTTATCTCATAGTCCCACTGATATTGAAAGCTACATCAGGCCTGGTTGTATCATTCTGACCATTTAT CTTCATCAGGCCGAGGCTGCATGGGAAGAACTTTGCTGCGGCCTTGGCTCCAGTTTGAGCAGGCTTCTAGCTGTATCAGAAGACACTTTCTGGAGAACTG GATGGATCTATATTAGGGTGCAACATCAAATAGCATTTGTTTATAATGGTCAGGTGGTTGTTGATACATCTTTGCCTCTCACAAGCAACAATTATAGCAA AATTTTAAGTGTCAAGCCAATTGCTATAACTGCATCTGAGAGAGCTGAATTTTTAATTAAGGGGGTCAACTTGTCTCGGCCTGCCACAAGATTACTCTGT GCAGTAGAAGGGAATTATATGGTTCAAGAAAATAGACAGGAGGTGATGGATGGTGTTGATAGCTTCAAAGGTCATGATGAGGTCCAATGTGTCAACTTTT CTTGCTCTATCCCCATGGTGACTGGAAGAGGATTCATTGAGATTGAAGATCACGGTTTTAGCAGCAGTTTCTTTCCTTTCTTAGTTGCAGAGGAAGATGT ATGTTCTGAGATCCGCATGCTTGAGGGTGTGTTGGAGACTGAAACAGATGCAGATTTTGAGGAAACTGAAAAAATGGAAGCCAAAAATCAAGCGATGAAC TTTGTTCATGAAATGAGCTGGCTTCTTCACAGAAGCCAGTTGAAGTCTAGATTGGGCTGCTCGGATCCTAGTATGAATCTCTTCCCACTAAGAAGATTCA AGTGGCTCATGGAATTCTCCATGGACCATGAATGGTGTGCTGTTGTGGGGAAACTCTTGAACATTCTGCACAACGGAATTGTTGGCACTGAAGAGCACTC ATCTTTGAATGTAGCATTATCAGAAATGGGCCTTCTTCACAGAGCTGTGAGGAGGAATTCTAGGTCTCTTGTGGAGCTCCTATTAAGATATGTTCCTGAG AAATTTGGGTCCAAAGACACGGCACTAGTTGGTGGAAGCCATGAGAGCATTTTGTTTAGGCCAGATGTCACAGGCCCAGCTGGTTTGACACCTCTTCACA TTGCAGCGGGTAAAGATGGTTCTGAAGATGTACTTGACACATTAACTGAAGATCCTGGAATGGTGGGCATTGAAGCATGGAAGAATGCTGTTGACAGCAC AGGCTTCACACCTGAAGATTATGCTCGCTTGCGTGGCCACTACACATACATCCATCTTGTACAAAGGAAAATTAACAAGAGACAAGCTGTTGGGGGCCAT GTTGTGCTTGACATCCCTAGCAATCTCTCAAACAGTAACATTAATGAGAAACAAAATGAAGGATTGTCCAGTAGCTTTGAGATCGGACAAACGGCATTAA GACCCACTCAGGGCAACTGCAAGCTTTGCAGTCAGAAGGTGGTTTATGGAATAGCCAGCAGGTCTCAGCTGTACAGGCCTGCAATGCTCTCAATGGTGGC AATTGCTGCAGTTTGTGTCTGTGTGGCTCTTCTGTTCAAGAGTTGTCCTGAGGTTCTGTACGTGTTCCGACCCTTCAGGTGGGAAATGTTGGACTACGGA ACAAGCTGA
AA sequence Show only first row Show all	>Potri.002G188700.4 pacid=42776760 polypeptide=Potri.002G188700.4.p locus=Potri.002G188700 ID=Potri.002G188700.4.v4.1 annot-version=v4.1 MEARFGGEPHHFYAMGPTDMRAVGKRGLEWDLNDWKWDGDLFIASPLNPVPSTSVSRPFFPLGVGTGVPATGNSSNSSSSCSDEVNLGVEKGKRELEKRR RVVVIDDDNLNDQETGGLSLKLGGQRDVGNWEGSSGKKTKLVGGGLSRAVCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHV LQEFDEGKRSCRRRLAGHNKRRRKTNPDTVGNGSSMNDDQNSGYLLISLLRILSNMHSNRSDETTDQDLLTHLLRSLASHSVEHGGRNMFGPLQEPRDLS TSFGNSEVVSTLLSNGEGPSNLKQHLTVPVSGMPQQVMPVHDAYGANIQTTSSLKPSIPNNFAVYSEVRESTAGQVKMNNFDLNDICVDSDDGTEDIERS PAPVNARTSSLDCPSWVQQDSHQSSPPQTSRNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIILTIY LHQAEAAWEELCCGLGSSLSRLLAVSEDTFWRTGWIYIRVQHQIAFVYNGQVVVDTSLPLTSNNYSKILSVKPIAITASERAEFLIKGVNLSRPATRLLC AVEGNYMVQENRQEVMDGVDSFKGHDEVQCVNFSCSIPMVTGRGFIEIEDHGFSSSFFPFLVAEEDVCSEIRMLEGVLETETDADFEETEKMEAKNQAMN FVHEMSWLLHRSQLKSRLGCSDPSMNLFPLRRFKWLMEFSMDHEWCAVVGKLLNILHNGIVGTEEHSSLNVALSEMGLLHRAVRRNSRSLVELLLRYVPE KFGSKDTALVGGSHESILFRPDVTGPAGLTPLHIAAGKDGSEDVLDTLTEDPGMVGIEAWKNAVDSTGFTPEDYARLRGHYTYIHLVQRKINKRQAVGGH VVLDIPSNLSNSNINEKQNEGLSSSFEIGQTALRPTQGNCKLCSQKVVYGIASRSQLYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYG TS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	3.00	0.8569
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	4.24	0.8685
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	4.69	0.8683
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	5.47	0.8559
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	7.48	0.8572
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	9.53	0.8578
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	10.90	0.8272
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.016G002100 [exp]	13.49	0.8110
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	13.52	0.8614	CPC902,TTN8.3
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	13.85	0.8463	Pt-FHY3.1

Compare expression of checked genes

Potri.002G188700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.