Plant FIBer expression Database

Potri.002G188801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G036901
[exp]
102 / 2e-26 ND /
Potri.011G116501
[exp]
45 / 1e-06 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G188801.1 pacid=42778194 polypeptide=Potri.002G188801.1.p locus=Potri.002G188801 ID=Potri.002G188801.1.v4.1 annot-version=v4.1
ATGATTTCAAGATATGAAACTGATCGGGAAAATCATCCTTCATTTGATGGAGCAGCTTGGTGTGTGGCTATAGAAGGAGTTACAAAAGGTAGAATATATG
GTGCACCTGGTATGCCGAAATTCATGGTTAGTATGAGTGCTTCATCACAATCTTATACGATAGAGTCAACACCTTCTAGTTCATCAATTCAAGCATTGAA
AGAGCAAATAAAGGAAAGAGATGATCATATTTTATCATTACAACAGGAGATGACTTCAATCAAAAAATTTCTTAGTAATATGGGATATCAAGCTTGGGCA
TCAAATATGGACCAAGATATGTTGACACCTATAGCTTCATCTATGCCGTCACATGTGGCTTCACAGATGACGACACCTATGTATCCCCTGTCTAATCCAG
TATATCGACCTAGGCCTCGACTACCATATACCGGCCCCATCTTATGA
AA sequence
>Potri.002G188801.1 pacid=42778194 polypeptide=Potri.002G188801.1.p locus=Potri.002G188801 ID=Potri.002G188801.1.v4.1 annot-version=v4.1
MISRYETDRENHPSFDGAAWCVAIEGVTKGRIYGAPGMPKFMVSMSASSQSYTIESTPSSSSIQALKEQIKERDDHILSLQQEMTSIKKFLSNMGYQAWA
SNMDQDMLTPIASSMPSHVASQMTTPMYPLSNPVYRPRPRLPYTGPIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G188801
[exp]
0 1
AT5G47530 Auxin-responsive family protei... Potri.019G096400
[exp]
7.74 0.6271
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.010G246650
[exp]
18.97 0.6038
AT1G79250 AGC1.7 AGC kinase 1.7 (.1.2) Potri.010G175900
[exp]
51.84 0.5606
AT3G16380 PAB6 poly(A) binding protein 6 (.1) Potri.001G191500
[exp]
53.44 0.5624
Potri.001G190450
[exp]
59.32 0.5542
AT4G01580 B3 AP2/B3-like transcriptional fa... Potri.007G035700
[exp]
70.28 0.5901
AT1G21750 ATPDI5, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.005G179000
[exp]
102.43 0.5852 Pt-PDI.2
AT3G47870 AS2 ASL29, SCP, LBD... SIDECAR POLLEN, ASYMMETRIC LEA... Potri.012G072000
[exp]
103.53 0.5319 Pt-LBD27.1
Potri.018G041650
[exp]
113.67 0.5395
Potri.004G152201
[exp]
113.84 0.5297

Potri.002G188801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.