Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53480 1731 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1705 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT4G15230 1615 / 0 ABCG30, ATPDR2, PDR2 ATP-binding cassette G30, pleiotropic drug resistance 2 (.1) AT4G15215 1605 / 0 ABCG41, PDR13, ATPDR13 ATP-binding cassette G41, pleiotropic drug resistance 13 (.1) AT4G15236 1597 / 0 ABCG43 ATP-binding cassette G43, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT4G15233 1546 / 0 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2) AT1G15210 1476 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1467 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 1437 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G66950 1425 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G006000 [exp] 1828 / 0 AT3G53480 1921 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.008G099000 [exp] 1822 / 0 AT3G53480 1853 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.010G153700 [exp] 1796 / 0 AT3G53480 1788 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.010G153800 [exp] 1758 / 0 AT3G53480 1881 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.008G098850 [exp] 1746 / 0 AT3G53480 1825 / 0.0 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) Potri.001G189500 [exp] 1479 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.003G049600 [exp] 1462 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.018G032900 [exp] 1435 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1425 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014150 [exp] 1446 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10025824 [exp] 1444 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10037562 [exp] 1423 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10041668 [exp] 1392 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1387 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1378 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1366 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1362 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1360 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1349 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G188900.1 pacid=42779265 polypeptide=Potri.002G188900.1.p locus=Potri.002G188900 ID=Potri.002G188900.1.v4.1 annot-version=v4.1 ATGGCAGCTCCTGTCACACGTAACGACCATAAAACAGATTCCCTGAGGATGGAGTTGGAAGAGTCGACAGAGAAAAGCATCATGACATCATTTCATAACC ATGCACCAAGCTTCATTGGTAGTGCTGCAACTAATTGTGATGCAACATCCTTATCCAGCTTGGAAGAAAACGAAGATGAAATTGAGCTACAGTGGGCAGC CATTGAAAGACTACCCACTTTTAGACGGCTTAGGCTGTCATTGTTTGACAAAAAGGAAGATGGCGAAGGAGAGGAAGGCAAGAGGGTGGTTGATGTTACC AAGCTTGAAGCTCTTGAACGCCATGTTTTCGTCGACAAACTTATAAAGAAGATCGAGGAAGATAATTGCAGGCTGTTAAGCAAGTTTAAAGAAAGAATGG ACAAGGTGGGTCTGGAATTGCCAACTGTGGAAGTGAGATATCGGAATTTGTCTGTGGAGGTGGAATATGAAGTGGTTCATGGAAAGCCCCTTCCTACTCT TTGGAACACCCTCAAGACTGCATTTGGGGGTATTGCAAATATTACGGGATGCAAGTCGGTACGAAACAAGATTAAAATTCTCAAAAACGTCAACGGCATC ATCAAGCCCTCAAGGATGACTCTCTTGCTTGGTCCTCCAGGTTGTGGGAAGACCACTTTATTACAGGCACTTACAGCGAAGCTTGACCAGTCCTTGAAGG TCGAGGGGGAAATTTCATATAATGGTTACAAACTCAATGAGTTTGTTCCTCAGAAGACATCAGTTTACATAAGCCAATATGACCAGCACATTTCTGAAAT GACTGTGAGGGAAACCCTCGACTTTTCTGCTCGTTGTCAAGGCATTGGGGGCAGAGAAGATATCATGAAAGAAATCAGTAGAAGGGAGAAGGAAGCTGGT ATTGTCCCAGAACCGGATGTAGATACCTACATGAAGGCAACTTCAGTTGAAGGATTGAAAAGGACTCTCCAGACGGACTATATCTTGAAGATCCTTGGAC TGGACATATGTGCTGATACAATGGTGGGAGATGCAATGAGGAGAGGAATTTCAGGTGGTCAAAAGAAAAGGCTAACAACAGGGGAAATGATAATTGGTCC AACAAAAGCGCTCTTTATGGACGAAATATCCAATGGCTTAGACAGCTCAACCACCTTCCAGATTGTTAGCTGCATGCAACAATTGGCACACATAACAAAA TCAACCATGTTGGTTTCACTTCTTCAGCCAGCTCCTGAGATCTTTGATCTCTTCGACGACATTATTTTGATGGCAGAGGGAAAGATAGTATACCATGGGC CTCGAGACAACGTTCTGGAGTTCTTTGAACATTGTGGTTTTAGGTGCCCACCACGAAAGGGCATTGCTGACTTCCTCCAAGAAGTAGTTTCTGAAAGGGA TCAAGGACAGTACTGGTATCATAAACAGCAACCTCATAGTTATGTTTCTATCGATATGCTTGTAAAGAATTTCCAGGAATTTCATGTGGGACAGAAGCTA GAAGGGGAGCTCTCCAGGCCTTTACAGAAATCTGAAAGTCATAAAAATGCTCTGTCATTCAGCATCTACTCCTTAAGAAAATGGGAACTATTCAAAGTTT GTATGGATAGAGAATGGCTGCTTATGAAGCGAAACTTGTCTCTTCATGTATTCAAATCAGTACAGCTCGTGGTCACTGCATTAATTACAATGACAGTGTT CATACGTAGTCGAATGGATATTGACATGGTCGACGGCAACCTATACATGGGTTCCTTGTTTTATGCTCTAATTAGATTAATGTGCAATGGGATTACCGAA TTGTCATTGACTATACAAAGAATAGCAGTTTTCTACAAGCAAAGGGATTTCTACTTTTATCCTGCGTGGGCTTATTCTGTTCCAGCTGCCATTTTAAAGA TTCCGTTTTCATTGCTAGATGCATTTCTTTGGACAGCTCTTACCTATTACGTTATTGGTTTCAGTCCTGAACCAGAAAGGTTTTTCTACCACTTCTTTCT TCTGTTCCTTGTTCATCAAGTGTCTGTATCAATGTTCCGTCTGATTGCTTCCATAGTTCGGAATCCATCTATTGCATCAACATTCGCTCTTTTCATTATA TTAATCACATTTCTATTTGGTGGATTTGTAATTCGACAACCTTCGTTACCTTCTTGGTTGAGGTGGGGCTTTTGGCTCTCTCCACTGGCATATGCGGAAA TCGGTGCATCTTTAAACGAATTCCTTGCTCCGAGGTGGCAAAAGGTTTCATCTTCCAATATTACATTAGGTCAGAAAATTCTCGAAAGCCGGGGACTATA CTTCAATGAATACTTCTATTGGATACCTTTAGGAGCATTAATTGGATTCTGGATAATTTTCAACATTGGATTCACCTGCGCCCTCAGTTATTCAAAAGCC CCTCGGAGATCTCGGACCATAATTTCTCAAGAAAGGCTCTCCAATATTCTAAAGAGAAAACAAGATTTGAGCGACTTTCCTCGCGCTGAAACACCAAAAC CTGCCGCAGAAATGGAGAAAATCAAAATGATTTTGCCTTTCGAGCCCATAACAATATCCTTTCAGAATGTGCAATATTTTGTCGACACTCCTAAGATATT AAGAAAGCAAGGTCTTCCACAAAAAAGGCTGCAGCTTCTTCATGATATCACTGGTGCCTTCAGACCTGGGATTCTTACGGCATTGATGGGTGTTAGTGGA GCTGGGAAAACAACACTAATGGATGTTCTTTCTGGAAGAAAAACTGGTGGCATTATTGAAGGCGAGATAAGAATTGGAGGGTACCCTAAAGCCCAAAAGA CGTATGCTAGAATATCTGGTTATTGTGAACAAACAGATATTCATTCTCCACAGATTACAGTAGAAGAGTCAGTAATGTACTCAGCTTGGTTGCGGTTGCC AGCTCAGATTGACAATAGGACAAGATCTGAATTTGTAGCAGAAGTTATTGAGATGATTGAGCTTGGTGAAATCAGAGATGAATTAGTTGGCATCCCTGGT GTTAGTGGTATATCGACCGAGCAGCGAAAACGGCTAACTATTGCCGTAGAACTTGTTTCCAATCCATCTGTAATATTCATGGATGAGCCCACCTCTGGTC TGGATGCCAGAGCAGCTGCAATCGTCATGCGAGTTGCAAAGAACATTGTTAATACAAACAGGACAGTTGTGTGCACAATTCACCAGCCAAGTATTGATGT TTTTGAGGCATTTGATGAGCTCATTTTGATGAAACGAGGAGGACAAATAATATATTCTGGAGAGCTGGGTCAGAATTCAAGTAAGCTTATTGAGTATTTT GAGGGCATTCATGGAGTTCCCAAAATCAAAGAAAATCACAACCCTGCAACATGGATGTTAGAGGTTACCGGTTCTTCTATGGAAGCTCGACTTGGTTTAG ATTTTGCAAATCTCTACAGGGACTCCCATCTCTTCCAGAAAAATGAAGAGCTAGTTGCTAGACTGGGCCTTCCAGAACAGGGTTCGAAGGAATTGCATTT CTCCACCCGATTTCCACAAAATGCATGGGAACAATTTAAGGCGTGCCTTTGGAAACAAGAATTGTCCTACTGGAGAAGTCCAAAATATAACTTGGTTCGG TTGATATTTATCATCGTGTCTTCTTTGATATTCGGAGCACTTCTTTGGCAAAAAGGACAGAAAATAAATGGTGAACAGGACTTCTTCAACATACTGGGAT CTATTTTCATCTTTATTCAGTTCGCCGGAATAGCCAACTGCTCATCTGTTATGCCATTTGTAGCTACTGAACGCACCATTGTATACCGGGAAAGGTTTGC TGGAATGTACTCTTCGTGGGCGTACTCGTCTGCACAGGTGATTGTAGAAATTCCATATATATTGCTCCAAGCTGTGCTGTTTCTGATGATTACATATCCA GCAATAAATTTCTACTGGTCAGCTTACAAAGTATTTTGGTACTTCTACTCAATGTTCTGCACATTGCTCTATTTCAATTACCTGGGATTGCTGCTTGTCT CATTGACCCCAAATTTCCAAATGGCTGCAATATGGGCTAGTTTCTTCTATACCCTCACGAATTTGTTCTCGGGCTACCTTGTACCGGAACCGAAAATGCC TAGATGGTGGGCTTGGGGCTATTGGATTTGTCCAATTTCATGGTCCTTGAAAGGCCTTCTGGCATCACAGTACGGTGATATAGAAGCGGAAATCACAGCA TATGGAGAGCGAAAATCAATCAGTTCCTTCTTACGAAGTTATTTTGGGTATAAACAAGATGATTTAGGTGTAGTGGCAATTGTTCTTCTTGCTTTTCCAG TTTTCTTTGCACTCGCTTTCGCAATTACCATAGCAAAACTGAACTTCCAAAAAAGGTAA
AA sequence Show only first row Show all	>Potri.002G188900.1 pacid=42779265 polypeptide=Potri.002G188900.1.p locus=Potri.002G188900 ID=Potri.002G188900.1.v4.1 annot-version=v4.1 MAAPVTRNDHKTDSLRMELEESTEKSIMTSFHNHAPSFIGSAATNCDATSLSSLEENEDEIELQWAAIERLPTFRRLRLSLFDKKEDGEGEEGKRVVDVT KLEALERHVFVDKLIKKIEEDNCRLLSKFKERMDKVGLELPTVEVRYRNLSVEVEYEVVHGKPLPTLWNTLKTAFGGIANITGCKSVRNKIKILKNVNGI IKPSRMTLLLGPPGCGKTTLLQALTAKLDQSLKVEGEISYNGYKLNEFVPQKTSVYISQYDQHISEMTVRETLDFSARCQGIGGREDIMKEISRREKEAG IVPEPDVDTYMKATSVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIIGPTKALFMDEISNGLDSSTTFQIVSCMQQLAHITK STMLVSLLQPAPEIFDLFDDIILMAEGKIVYHGPRDNVLEFFEHCGFRCPPRKGIADFLQEVVSERDQGQYWYHKQQPHSYVSIDMLVKNFQEFHVGQKL EGELSRPLQKSESHKNALSFSIYSLRKWELFKVCMDREWLLMKRNLSLHVFKSVQLVVTALITMTVFIRSRMDIDMVDGNLYMGSLFYALIRLMCNGITE LSLTIQRIAVFYKQRDFYFYPAWAYSVPAAILKIPFSLLDAFLWTALTYYVIGFSPEPERFFYHFFLLFLVHQVSVSMFRLIASIVRNPSIASTFALFII LITFLFGGFVIRQPSLPSWLRWGFWLSPLAYAEIGASLNEFLAPRWQKVSSSNITLGQKILESRGLYFNEYFYWIPLGALIGFWIIFNIGFTCALSYSKA PRRSRTIISQERLSNILKRKQDLSDFPRAETPKPAAEMEKIKMILPFEPITISFQNVQYFVDTPKILRKQGLPQKRLQLLHDITGAFRPGILTALMGVSG AGKTTLMDVLSGRKTGGIIEGEIRIGGYPKAQKTYARISGYCEQTDIHSPQITVEESVMYSAWLRLPAQIDNRTRSEFVAEVIEMIELGEIRDELVGIPG VSGISTEQRKRLTIAVELVSNPSVIFMDEPTSGLDARAAAIVMRVAKNIVNTNRTVVCTIHQPSIDVFEAFDELILMKRGGQIIYSGELGQNSSKLIEYF EGIHGVPKIKENHNPATWMLEVTGSSMEARLGLDFANLYRDSHLFQKNEELVARLGLPEQGSKELHFSTRFPQNAWEQFKACLWKQELSYWRSPKYNLVR LIFIIVSSLIFGALLWQKGQKINGEQDFFNILGSIFIFIQFAGIANCSSVMPFVATERTIVYRERFAGMYSSWAYSSAQVIVEIPYILLQAVLFLMITYP AINFYWSAYKVFWYFYSMFCTLLYFNYLGLLLVSLTPNFQMAAIWASFFYTLTNLFSGYLVPEPKMPRWWAWGYWICPISWSLKGLLASQYGDIEAEITA YGERKSISSFLRSYFGYKQDDLGVVAIVLLAFPVFFALAFAITIAKLNFQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	0	1
AT1G58170			Disease resistance-responsive ...		Potri.005G100600 [exp]	2.82	0.9652
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	2.82	0.9838
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	3.87	0.9719
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	6.00	0.9707
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	8.36	0.9665
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	9.16	0.9581
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	10.72	0.9450
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.012G062200 [exp]	10.81	0.9324
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	12.36	0.9649
AT1G06840			Leucine-rich repeat protein ki...		Potri.016G140101 [exp]	12.96	0.9466

Compare expression of checked genes

Potri.002G188900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.