Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01850 741 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 739 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) AT3G17390 720 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT2G36880 700 / 0 MAT3 methionine adenosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114700 [exp] 776 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.013G004100 [exp] 738 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.008G099300 [exp] 738 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 733 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.006G123200 [exp] 685 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010070 [exp] 748 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10004522 [exp] 743 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10009985 [exp] 738 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10038044 [exp] 735 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10013828 [exp] 692 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 689 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10023007 [exp] 689 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10026541 [exp] 465 / 4e-165 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00438 [poplar] [flax] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain PF02772 [poplar] [flax] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [poplar] [flax] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G189200.1 pacid=42776908 polypeptide=Potri.002G189200.1.p locus=Potri.002G189200 ID=Potri.002G189200.1.v4.1 annot-version=v4.1 ATGCAGCTCAAGAAAATGGAAACCTTTCTATTCACCTCTGAGTCAGTGAATGAGGGCCACCCTGACAAACTATGTGACCAGATCTCTGATGCAGTGCTCG ATGCCTGCCTTGAGCAGGACCCAGACAGCAAGGTTGCTTGCGAGACATGTACAAAGACAAACATGGTCATGGTCTTTGGAGAGATCACCACCAAGGGAAA GATAGACTATGAAAAGATTGTTCGTGACACATGCCGTAACATTGGATTTGTTTCTGACGACGTTGGTCTTGATGCTGACAAGTGCAAAGTATTGGTTAAC ATTGAGCAACAGAGCCCGGATATTGCCCAGGGTGTCCACGGTCACTTTACCAAGCGCCCAGAGGAGATTGGTGCTGGTGACCAGGGCCATATGTTTGGTT ATGCCACTGATGAGACCCCCGAGTATATGCCTTTGAGCCATGTTCTTGCCACCAAGCTTGGTGCTCGCCTCACCGAGGTTAGGAAGAATGGAACCTGCCC TTGGTTAAGACCTGATGGCAAGACTCAAGTTACTGTTGAGTACTTCAATGACAATGGTGCAATGGTCCCTGTTCGTGTCCACACTGTTCTCATCTCTACT CAGCATGATGAGACTGTCACAAATGATGAAATTGCCGCTGATCTAAAGGAGTATGTCATCAAGCCTGTTATCCCGGAGAAGTACCTTGATGAGAAAACTA TCTTTCACCTCAACCCATCTGGCCGTTTTGTTATTGGTGGTCCTCATGGTGATGCAGGTCTCACTGGACGCAAGATCATTATTGACACCTATGGTGGCTG GGGAGCCCATGGTGGTGGTGCTTTCTCAGGGAAGGACCCAACTAAGGTGGATAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCCAAGAGCATCGTAGCA AATGGTCTTGCTCGTAGGTGCATTGTGCAAGTTTCCTATGCTATTGGTGTACCTGAGCCTTTGTCAGTCTTTGTGGACACCTATGGCACTGGAAAAATTC CTGACAAGGAGATCCTTAAGATTGTGAAGGAGAGCTTTGACTTTAGGCCTGGAATGATGACCATCAACCTGGATCTCAAGAGGGGGGGTAATAGGTTCTT GAAGACAGCTGCATACGGACATTTTGGAAGGGATGACCCAGACTTCACCTGGGAAGTTGTCAAGCCCCTCAAATGGGAGAAGCCTCAAGCTTAA
AA sequence Show only first row Show all	>Potri.002G189200.1 pacid=42776908 polypeptide=Potri.002G189200.1.p locus=Potri.002G189200 ID=Potri.002G189200.1.v4.1 annot-version=v4.1 MQLKKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGKIDYEKIVRDTCRNIGFVSDDVGLDADKCKVLVN IEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYFNDNGAMVPVRVHTVLIST QHDETVTNDEIAADLKEYVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVA NGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	0	1
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	2.44	0.9370
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Potri.001G358200 [exp]	3.00	0.9082
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	3.46	0.9183	Pt-PAL.2,PAL2
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	4.47	0.9325	CAld5H/F5H4,Pt-FAH1.4
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	4.58	0.9135	FAH1.3
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	4.58	0.9347	Pt-SAM1.1
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	4.69	0.8975
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	6.70	0.9310	Pt-4CL.3,Ptr4CL3
AT2G37750			unknown protein		Potri.016G101900 [exp]	6.92	0.8585
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	8.24	0.8322

Compare expression of checked genes

Potri.002G189200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.