Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01860 1396 / 0 Transducin family protein / WD-40 repeat family protein (.1.2) AT4G02730 53 / 9e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49180 52 / 2e-06 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 49 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 47 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT2G22040 46 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 46 / 0.0001 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18060 46 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT3G18140 44 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 44 / 0.0006 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079600 [exp] 56 / 2e-07 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 54 / 3e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G047300 [exp] 51 / 5e-06 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 49 / 2e-05 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 45 / 0.0002 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G049200 [exp] 45 / 0.0004 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G144400 [exp] 45 / 0.0004 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.008G002700 [exp] 45 / 0.0004 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.015G041200 [exp] 45 / 0.0005 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038045 [exp] 1548 / 0 AT4G01860 1340 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10009986 [exp] 1546 / 0 AT4G01860 1344 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10001301 [exp] 57 / 1e-07 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10012230 [exp] 54 / 7e-07 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 53 / 9e-07 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 53 / 1e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012706 [exp] 53 / 2e-06 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10006916 [exp] 52 / 2e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013988 [exp] 49 / 2e-05 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 49 / 4e-05 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G189400.1 pacid=42777913 polypeptide=Potri.002G189400.1.p locus=Potri.002G189400 ID=Potri.002G189400.1.v4.1 annot-version=v4.1 ATGGAAGAGCAGCAGCAGAAACAGAGCAGGTGGAAACTAGAGAGAGGGCATTACCTAGGAGAAATATCAGCTCTCTGTTTCCTCCACCCTCCTTCTAACC TCTCTTCTCTCCCTTTCCTCCTCGCTGGCACAGGATCGCAACTGCTGCTATATAATTTAGAATCAGGAAAAATAATAAAATCCTTTGAAGTTTTTGATGG AATTCGTGTCCATGGAATTACTTGCAGCTCCAGTGAAGAAGAGTCATCGAACTTTCCTTCTTTAACTGTTTCTTTCAAAATTGCTGTCTTCGGTGAAAAA AGACTCAAACTTTTCAACTTACACATTCAAACTCCTTCGCAAGTGAATGCAGATTTAGCTTTGATTCATTGCTTGCCCAAGTTCACTCATTGGGTCTTGG ATGTTTCCTTCTTCAAGAACTCTGCAGTCTCTTCAAGTCAGGAAGAGAGACAATGTCTTGCAATTGGATGTAGTGATAACTCTGTCCATCTCTGGGATAT GTCGGTGTCCAGTGTAGTTCTTCAAGTTCAATCTCCAGAGAGATGCCTTTTGTATTCCATGCGGTTATGGGGTGACAGTTTAGAAACTTTAAGAATTGCT TCCGGTACCATATTCAATGAGATCATCGTTTGGAAAGTGGTTCCTGTAGAACCTCAACTTGGTGGGCTGCCTTCAACAAGTCTCTTGGAAGATGATATGT ATTTGAGCTGTTCATTACCCGACTCTTCCCAGCTTCGTTTTCAGCAGCATAAATCTGCTCATATGTGCAGACTTATTGGACATGAAGGCTCAATTTTTCG CATAGCATGGTCCTCAGATGGATCCAAACTGGTTTCCGTCTCTGATGATCGCAGTGCTCGTATCTGGGCTGTTAGGGATGAGCTGAAAGATTCAGATAAC AGAGAGGAGAAGGTTGCAGGCCCTGTTCTGTTTGGTCATAATGCTAGAGTTTGGGACTGCTGTATCTGTGATTCTGTAATTGTCACTGCTGGTGAAGATT GTACATGTCGTGTATGGAGATTGGATGGCAAACAGCTCAAGATGATTAAGGAACACATAGGAAGAGGTATATGGCGTTGTTTGTATGATCCAACCTCTTC ACTCCTCATTACTGCTGGATTTGACTCTTCAATCAAAGTGCATCAAGTTTCTGCTTCTATTTCCCAGAGCTTGGAAGGACAAATTGAATCAAAACCATTC ATTGACAGAATGGAGATATTTACCTGTCGCATCCCTAATTCATCTGAATATATTGGTCTCATGGACAGCAAAAGTGAATATGTACGTTGCTTGCATTTCA CATGCGAAGATACTCTTTATGTTGCGACAAACAATGGTTATCTGTACCATGCTAGATTACATGGAACTGTGGATGTAAAATGGACAAAGCTTGCTCAGCT CAGTGAAGAGGTGCCGATTGTTTGTATGGATTTGCTGTCCAAAAAACTCCCCAAACATTCCAATGGAGTTGATGACTGGGTTGCTTTAGGAGATGGTAAA GGAAACATGACAATTGTGAGAATTATGGGTGACGTTTTCACTCCTGAAGTGGGTTTCACCGTCACCTGGTCAGCCGGGAAAGAGAGACAACTCTTAGGAA CCTATTGGTGCAAGGCATTGGGATGTAGGTTCATTTTTACTGCTGATCCTAGAGGAATTTTGAAGCTATGGAGGTTAAGCGATCCTTTACCATCTGGTTC TCTCACTTATGGAAGAACTTTTGATGCATCCCTTATAGCAGAATTCACATCATGTTTTGGAATTCGGATTATGTGTCTAGATGCATCATTTGAGGATGAG GTGCTGGTATGTGGGGATTTGCGTGGAAATCTGGTTCTTTTCCCTTTGTCAAAGGGCTTGCTGCTGGACAAACCTACTCTTCCAGAAATAAAAATTTCAC CATTGTGTTATTTTAAAGGATCTCATGGAATATCAACTGTATCCAACATTTCTGTTGCTAAATTGAGTGACACGATTGAAATACGCTCGACTGGAGGTGA TGGTTGCATATGCTATTTAGAATATGACCCAGACCAGTGTGGTTTGGAATTTATTGGGATGAAACAAGTAAAAGAATTGAGTTTAGTTCAATCTGTCTCT GCCGATAACAACTGCCTCGATGATTTGGCTAATTGTGGATATGCTATTGGTTTTGCATCAACAGATTTTATAATCTGGAACTTAATAAGTGAGGCAAAGG TTGTGCAAATTCCATGTGGTGGATGGCGACGTCCTCATTCTTATTATCTTGGTGATGTACCAGAGGCGATGAGCTGTTTTGCATATGTCAAGGATGAGAT AATCTATATTCATCGAAAATGGGTACCAGAAAGGGAGTGGAAGATATTTCCCCAGAATTTGCACACCCAGTTTCATGGGAGAGAGATGCACTCCTTATGC TTTGTTTCTAAAAATACACTTGTTGAGGCAAATGGGAATGATTTTCAGTTTGATAGATCTAGTTGGATTGCTACTGGGTGTGAGGATGGAACTGTGAGGT TGACTAGGTATATTCCTGGAGTTGAGGGTTGGCTTACATCAAAATTGCTTGGGGAACATGTTGGTGGATCTGCTGTGAGATCAATATGCTCAGTATCAAA GATGCACATAATTGCTTCGGACTTGACCAACTTGTCAGATTGGACAAAGAGACAAAACACTTGTGCAGGGGACATGGATAATCCTTTCTTGTTGATCTCG GTTGGGGCAAAGCGGGTGCTAACTTCTTGGCTACTGAGAGATAGGAATCTAGACAAGGAAAATGTATTTATTGAACAAGAAAAAATGGAAAACGAAAATG GCTATAAGCCTTCGTCAGAAGTATCCTCATTGATGTCTTTCAAATGGCTGTCAACTGACATGCCTCCCAGAAATTCCAGTTCTCGTGGAAAAACAAAAGT AGCTGAGAACATACAAGGAATAACCAAAGAACTTAATGTGAATATTGATGTAACATCAGGACCACTTTTACTGGAAAAGGGAGAGGGATATTCAAAAATT TCTTATGATGATAAGTATGAGGATGACTGGAGATATCTGGCTGTCACTGCTTTTCTGGTGAAGTGTGCTGGTTCCAGGTTGACTGTCTGTTTTGTTGTTG TTGCTTGCTCAGATGCAACACTTGCACTGCGAGCTCTTGTTTTACCACATCGGTTATGGTTCGATGTGGCTTTGTTGGTTCCTCTATCATCACCAGTTTT AACATTGCAGCATGTCATCATTCCTAGCTGTTTGCCTTTTGAAGAGAACATTCGAATTGGAAATGTGTATATTGTGATCAGTGGAGCTACAGATGGAAGT ATTGCCTTTTGGGATCTAACTGACAATATTGAGGCTTTTGTTCAGCGGTTATCAACACTGAACATAGAGAAGTCCATAAATTGTCAAACACGGCCACGCA CTGGAAGAGGAAGTCAGGGTGGACGATGGTGGAGAACATTAAGCAGCGGTGTGCCTAAAAATAGACCAGGTGATGGTTTAGTTGCAATAAAAGCTGGAGA GAGGACTAACTGCAATTTGGCAAATCATCCTATGAATGAAGCATCAACAGCAGTAAGTGACGCGGAAAACTGCACAATAGTTTGTTCTCAAGCTGTAGAC AACACACATCATGAACCAGAAGTGAATAGTGTCAATTCCTTGCCAGGAATATGTGAAATAAGGCCTTTCCATGTCTTCAATAATGTTCACCAATCAGGGG TCAACTCTCTTCATATTTCAGACATACAGGATATTCAAAGTTCTGAAAATGGTTTTGCATTCAGTGTAATAAGTGGAGGCGATGATCAAGCACTCCACTG TCTTAAATTTGATTTGTCACCATTATCAACAGGGAAGGATTCTGATGTCGTGACATCAAATCTCATCAATTTATTCACTAGTTCTGAAAGCATGAAGAAT AATTGTTGTAGACAAAGCCAGACAAACAAGTACAGGATCAGATTTTTATATCATGACCGAATCATCTCAGCTCATAGCTCTGCCATAAAAGGTGTTTGGA CAGATGGCATGTGGGTGTTTTCTACTGGTCTTGATCAGCGCATCAGATGCTGGCTTCTTCAGGATAACTGTAAATTAACTGAACAAGCTTATTTGATCAT TAGTGTTCCAGAGCCAGAAGCACTGCATGCTAGAGCCCGTGGCAGGAACCACTACGAAATTGCAGTGGCTGGGAGAGGAATGCAAATGGTTGAGTTCTCT GCGTCTTAG
AA sequence Show only first row Show all	>Potri.002G189400.1 pacid=42777913 polypeptide=Potri.002G189400.1.p locus=Potri.002G189400 ID=Potri.002G189400.1.v4.1 annot-version=v4.1 MEEQQQKQSRWKLERGHYLGEISALCFLHPPSNLSSLPFLLAGTGSQLLLYNLESGKIIKSFEVFDGIRVHGITCSSSEEESSNFPSLTVSFKIAVFGEK RLKLFNLHIQTPSQVNADLALIHCLPKFTHWVLDVSFFKNSAVSSSQEERQCLAIGCSDNSVHLWDMSVSSVVLQVQSPERCLLYSMRLWGDSLETLRIA SGTIFNEIIVWKVVPVEPQLGGLPSTSLLEDDMYLSCSLPDSSQLRFQQHKSAHMCRLIGHEGSIFRIAWSSDGSKLVSVSDDRSARIWAVRDELKDSDN REEKVAGPVLFGHNARVWDCCICDSVIVTAGEDCTCRVWRLDGKQLKMIKEHIGRGIWRCLYDPTSSLLITAGFDSSIKVHQVSASISQSLEGQIESKPF IDRMEIFTCRIPNSSEYIGLMDSKSEYVRCLHFTCEDTLYVATNNGYLYHARLHGTVDVKWTKLAQLSEEVPIVCMDLLSKKLPKHSNGVDDWVALGDGK GNMTIVRIMGDVFTPEVGFTVTWSAGKERQLLGTYWCKALGCRFIFTADPRGILKLWRLSDPLPSGSLTYGRTFDASLIAEFTSCFGIRIMCLDASFEDE VLVCGDLRGNLVLFPLSKGLLLDKPTLPEIKISPLCYFKGSHGISTVSNISVAKLSDTIEIRSTGGDGCICYLEYDPDQCGLEFIGMKQVKELSLVQSVS ADNNCLDDLANCGYAIGFASTDFIIWNLISEAKVVQIPCGGWRRPHSYYLGDVPEAMSCFAYVKDEIIYIHRKWVPEREWKIFPQNLHTQFHGREMHSLC FVSKNTLVEANGNDFQFDRSSWIATGCEDGTVRLTRYIPGVEGWLTSKLLGEHVGGSAVRSICSVSKMHIIASDLTNLSDWTKRQNTCAGDMDNPFLLIS VGAKRVLTSWLLRDRNLDKENVFIEQEKMENENGYKPSSEVSSLMSFKWLSTDMPPRNSSSRGKTKVAENIQGITKELNVNIDVTSGPLLLEKGEGYSKI SYDDKYEDDWRYLAVTAFLVKCAGSRLTVCFVVVACSDATLALRALVLPHRLWFDVALLVPLSSPVLTLQHVIIPSCLPFEENIRIGNVYIVISGATDGS IAFWDLTDNIEAFVQRLSTLNIEKSINCQTRPRTGRGSQGGRWWRTLSSGVPKNRPGDGLVAIKAGERTNCNLANHPMNEASTAVSDAENCTIVCSQAVD NTHHEPEVNSVNSLPGICEIRPFHVFNNVHQSGVNSLHISDIQDIQSSENGFAFSVISGGDDQALHCLKFDLSPLSTGKDSDVVTSNLINLFTSSESMKN NCCRQSQTNKYRIRFLYHDRIISAHSSAIKGVWTDGMWVFSTGLDQRIRCWLLQDNCKLTEQAYLIISVPEPEALHARARGRNHYEIAVAGRGMQMVEFS AS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	0	1
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	1.00	0.8998
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	1.41	0.8776
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	4.00	0.8390
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	4.24	0.8604
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	6.92	0.8318	PURE.1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	8.94	0.8217	Pt-ATMAK10.3
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	9.53	0.8400
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	11.18	0.8470
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	11.22	0.8295
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	11.66	0.8515

Compare expression of checked genes

Potri.002G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.