Plant FIBer expression Database

Potri.002G189800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01880 574 / 0 methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038053
[exp]
604 / 0 AT4G01880 535 / 0.0 methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF05206 TRM13 Methyltransferase TRM13
CL0361 C2H2-zf PF05253 zf-U11-48K U11-48K-like CHHC zinc finger
CL0361 PF11722 zf-TRM13_CCCH CCCH zinc finger in TRM13 protein
Representative CDS sequence
>Potri.002G189800.1 pacid=42778398 polypeptide=Potri.002G189800.1.p locus=Potri.002G189800 ID=Potri.002G189800.1.v4.1 annot-version=v4.1
ATGGAGGAGAACCGCTGCAAGTTCTGGCTTCCCAAAAAGAACCGATTTTGTGCCAACTCCCCTCTAAACGATTCCCAGTTCTGCGGCAACCACAAACCGA
GGTCCACTGAACAGTGGATTCCATGCCCCATCGACCCTTCTCATTCTGTTCTAAAAGAAAATCTTGAAAGCCATGTTAAGAGATGCCCTTTATTGAAACA
AGCTCAATCCTTGTCTCTTCAACCATTTTATCAAAAGGGCATCAATGCTGGCAAAGAAGAAGAAGAAGAAGATAATGTTAGCTCTGAGATGAAGAGGAGT
GCTGTTTATAGCATGACTGTGACTCAATTTTGCAAACTTATTAACAAGATTGAATCTGTTCATGCTTCTACATGTAAGGATATCTGGGAATCATATAAAG
TTCCAGAAGCTTGTAATATGTGGATTAAAAGAGAAGTAGACAGGAAATTACCATTTCAAGAGAAACATGTAGCACAACAAGCGTCAATTCTTGGGAATTT
GGAGGACTTTGGGGTGATAAAGAGTTCAGTAGGAAGTAAAGAGGCTGATAGTCAGGGGTTTTGTAGTGATGATAGCAATTTTGTTCACGCAGTCGTTGAA
TTTGGAGCAGGGAGAGGGTACTTGACACAGATGCTGGCAGACTGTTATGGATTTGACAGAGTCTTTCTGGTTGAGCGCAAGTCGTACAAACTTAAGGCTG
ATCGATCTTTGCGACAGAAGGAGAGCTTGATATTAGAGCGTTTGAGGATTGATATTGAGGACTTAAACTTGAATGCTGTTGAGTCTTTAAGGGGAATCCC
TTATTTGGCTATTGGTAAACATCTCTGTGGGCCAGCAACTGATTTGACACTGAGATGTTGCTTGTCTGAGCAATGTAATCAAGGCAGTGTGCAAGATTGC
AGGAGCAATGCTAACCTTAAAGGCCTTGCTATAGCAACATGCTGCCATCATCTTTGTCAGTGGAAACATTACACAAACAGGAAGTTCATGTCCGATTTGG
GGATCACCAAGGGACAATTTCATGCAATGACATGGTTTACCTCCTGGGCAGTAGATGCTGACCATAGTTCAGATCTTCCTGATATTACTGACTGCAGTTT
GCAGTTACAATCCATTTATTACAGTGAGGAGAAACAATGCTTTGGGGACATGCATGGGGTTGAAGATGTTGTGAGGAATATGAAACCAGTTGAAAGGGCT
GTGTTGGGTTTTAAGTGTAAGCAGATCATCGACGTAGGAAGGATGATGTGGGCAAAAGAACATGGATTAGACACACAGCTTGTGAAGTATGTCCCTTCAG
GCATCTCTCCAGAAAACCATTTATTGCTTGCCAGACATGCCAAGTGCTTGTAA
AA sequence
>Potri.002G189800.1 pacid=42778398 polypeptide=Potri.002G189800.1.p locus=Potri.002G189800 ID=Potri.002G189800.1.v4.1 annot-version=v4.1
MEENRCKFWLPKKNRFCANSPLNDSQFCGNHKPRSTEQWIPCPIDPSHSVLKENLESHVKRCPLLKQAQSLSLQPFYQKGINAGKEEEEEDNVSSEMKRS
AVYSMTVTQFCKLINKIESVHASTCKDIWESYKVPEACNMWIKREVDRKLPFQEKHVAQQASILGNLEDFGVIKSSVGSKEADSQGFCSDDSNFVHAVVE
FGAGRGYLTQMLADCYGFDRVFLVERKSYKLKADRSLRQKESLILERLRIDIEDLNLNAVESLRGIPYLAIGKHLCGPATDLTLRCCLSEQCNQGSVQDC
RSNANLKGLAIATCCHHLCQWKHYTNRKFMSDLGITKGQFHAMTWFTSWAVDADHSSDLPDITDCSLQLQSIYYSEEKQCFGDMHGVEDVVRNMKPVERA
VLGFKCKQIIDVGRMMWAKEHGLDTQLVKYVPSGISPENHLLLARHAKCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01880 methyltransferases (.1) Potri.002G189800
[exp]
0 1
AT1G72660 P-loop containing nucleoside t... Potri.001G170300
[exp]
9.38 0.7657 Pt-DRG1.1
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.003G194000
[exp]
81.03 0.7041
AT2G30140 UDP-Glycosyltransferase superf... Potri.009G077500
[exp]
108.85 0.7038
AT1G64050 unknown protein Potri.003G133100
[exp]
123.85 0.6978
AT5G11010 Pre-mRNA cleavage complex II p... Potri.012G073500
[exp]
144.49 0.6610
AT2G20500 unknown protein Potri.005G224200
[exp]
149.47 0.6700
AT3G49290 ABIL2 ABL interactor-like protein 2 ... Potri.003G142800
[exp]
151.15 0.6741
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Potri.018G067200
[exp]
156.59 0.6832 PRMT901
AT4G10960 UGE5 UDP-D-glucose/UDP-D-galactose ... Potri.003G140900
[exp]
231.43 0.6657 RHD1.2

Potri.002G189800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.