Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47110 256 / 6e-89 UBQ6 ubiquitin 6 (.1.2) AT3G62250 256 / 8e-89 UBQ5 ubiquitin 5 (.1) AT1G23410 246 / 5e-85 Ribosomal protein S27a / Ubiquitin family protein (.1) AT2G35635 155 / 4e-49 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT4G05050 155 / 4e-49 UBQ11 ubiquitin 11 (.1.2.3.4) AT2G36170 154 / 4e-49 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 154 / 4e-49 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT1G31340 155 / 5e-49 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT4G02890 155 / 4e-48 UBQ14 Ubiquitin family protein (.1.2.3.4) AT5G03240 155 / 2e-47 UBQ3 polyubiquitin 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025300 [exp] 269 / 4e-94 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.012G114000 [exp] 269 / 4e-94 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.015G111500 [exp] 269 / 4e-94 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Potri.014G115100 [exp] 267 / 3e-93 AT2G47110 255 / 2e-88 ubiquitin 6 (.1.2) Potri.016G077000 [exp] 154 / 1e-49 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 154 / 4e-49 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 154 / 4e-49 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 154 / 4e-49 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.002G062500 [exp] 155 / 6e-49 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030894 [exp] 263 / 1e-91 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 263 / 1e-91 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10008873 [exp] 154 / 5e-49 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10018367 [exp] 155 / 5e-48 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10010493 [exp] 59 / 1e-10 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10034563 [exp] 54 / 6e-09 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 51 / 6e-08 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10040001 [exp] 51 / 7e-08 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10022411 [exp] 51 / 9e-08 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10027323 [exp] 50 / 1e-07 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01599 [poplar] [flax] Ribosomal_S27 Ribosomal protein S27a CL0072 [poplar] [flax] Ubiquitin PF11976 [poplar] [flax] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like
Representative CDS sequence Show only first row Show all	>Potri.002G190000.3 pacid=42778615 polypeptide=Potri.002G190000.3.p locus=Potri.002G190000 ID=Potri.002G190000.3.v4.1 annot-version=v4.1 ATGCAGATCTTCGTGAAAACCTTGACGGGTAAGACAATAACCCTCGAGGTTGAGTCCTCAGACACGATCGACAATGTCAAAGCCAAGATTCAAGACAAGG AGGGCATCCCACCAGACCAACAGCGTCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGCACGCTCGCTGACTACAACATCCAGAAGGAGTCCACTCT CCACTTGGTTCTTCGGTTGAGGGGTGGTGCCAAGAAGAGAAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTT GCTGTCCTTCAGTTCTACAAGGTTGATGATAGCGGCAAAGTCCAGAGATTGAGGAAGGAGTGCCCTAATGCTGAGTGCGGTGCTGGAACTTTCATGGCTA ATCATTTTGATAGGCACTACTGTGGTAAGTGTGGGCTTACCTATGTTTACCAGAAGGCTGGTGGTGATTAA
AA sequence Show only first row Show all	>Potri.002G190000.3 pacid=42778615 polypeptide=Potri.002G190000.3.p locus=Potri.002G190000 ID=Potri.002G190000.3.v4.1 annot-version=v4.1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL AVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.002G190000 [exp]	0	1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.002G099500 [exp]	1.00	0.9378
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	1.41	0.9213
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.014G192601 [exp]	3.16	0.8975
AT4G18100			Ribosomal protein L32e (.1)		Potri.014G191000 [exp]	3.87	0.9133
AT3G06700			Ribosomal L29e protein family ...		Potri.008G107700 [exp]	5.29	0.8594
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	5.47	0.8864
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	6.70	0.8813
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	6.92	0.8906	Pt-WRP15.1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.014G115100 [exp]	7.48	0.9067	Pt-UBI.3
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	9.48	0.8577

Compare expression of checked genes

Potri.002G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.