Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47115 345 / 1e-118 unknown protein AT1G10660 252 / 3e-82 unknown protein AT5G62960 235 / 3e-75 unknown protein AT3G27770 190 / 6e-58 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115200 [exp] 593 / 0 AT2G47115 340 / 4e-117 unknown protein Potri.010G042600 [exp] 244 / 1e-78 AT1G10660 372 / 1e-129 unknown protein Potri.015G078200 [exp] 243 / 4e-78 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 241 / 2e-77 AT5G62960 387 / 1e-134 unknown protein Potri.001G347400 [exp] 224 / 3e-71 AT3G27770 314 / 9e-107 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038056 [exp] 299 / 1e-100 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 283 / 3e-94 AT1G10660 246 / 3e-80 unknown protein Lus10042109 [exp] 235 / 5e-75 AT5G62960 397 / 1e-138 unknown protein Lus10032130 [exp] 232 / 9e-74 AT5G62960 303 / 2e-101 unknown protein Lus10014556 [exp] 230 / 3e-73 AT5G62960 305 / 3e-102 unknown protein Lus10029133 [exp] 230 / 2e-72 AT1G10660 338 / 5e-115 unknown protein Lus10027692 [exp] 225 / 1e-71 AT5G62960 355 / 2e-122 unknown protein Lus10039964 [exp] 186 / 1e-54 AT5G62960 247 / 7e-78 unknown protein Lus10002386 [exp] 163 / 9e-48 AT5G62960 320 / 5e-109 unknown protein Lus10013029 [exp] 161 / 6e-44 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G190200.1 pacid=42779678 polypeptide=Potri.002G190200.1.p locus=Potri.002G190200 ID=Potri.002G190200.1.v4.1 annot-version=v4.1 ATGGCACTAGTCATATATTGGTATGATATCGTATGTTTTGGCATTGTTGCTGCGTCTTTTGTTGTGTCCCTGTGGGTTCTATGGAGGAGGGACCTCGCCT CAAAATGTGACGATAACTTCTTATATCAGAGCCTCCTCGTGGCTCGACCGGATAATAATGATCGGACCGTGCTTGCAATGCCAAGGAACCATGTTGGTTC TTCCCAGCTGTGGACTAGTTGCTGGAAAGGGGTGCACCCAGGGTGGCTCCTGGCTACTCGTTTCATCTCCTTCCTGGTCATGGCTGGACTCTTGTGGAGG GATATCGTGGACTGGGACGCCACCATATTCGTTTACTACACAGAATGGACATTTATGTTGATTATGATATATTTCGCGCTGGGCACTGTGATATCTGCAT ATGGATGTTGGGTGTCCTTAAAGCAACCAGCTGTGTCTGAACATGGCGAAAATTCTGTTTTCTTGAAAAGGGATGTGGAAGAGGATGGAACTGCAACCTC TATAACTTATAAGGAGAAAAAAAGTGGGGGTACCATCAAGTTACGAAGTCACTGTGCTGAGGAGGCAATTCGAGAAAGAGCTGGATTTTGGGGATACCTT ATGCAAATTATATACCAGACTTGTGCAGGTGCTGTCATCCTAACGGACATTATATTTTGGTGCATTATAGTCCCTTTTTTATCAAATACGCACCTTGGCC TCAATGCGTTGATGGGTTGCATGCATTCTCTGAATGCTGTTTTTCTATTGCTAGATACCGCTCTCAATAGCCTTCCATTTCCTTGGTTCCGCCTTGCATA TTTTGTGCAGTGGAGCTGCCTCTATGTCATTTTCCAGTGGGTTATTCACGCTTGTGGTTTTACGTGGTGGCCATATCCATTCCTCGAGCTTAACACACCT TGGGCTCCTTTATGGTATTTTGCGATGGCTGTAATTCACATTCCTTGTTATGGAATATATGCACTGATTTTTAAAGCAAAAAATACGATTTTTCCCCGAT TGTTCCCTCGTGCTTTTGTGAGATCAAACTAG
AA sequence Show only first row Show all	>Potri.002G190200.1 pacid=42779678 polypeptide=Potri.002G190200.1.p locus=Potri.002G190200 ID=Potri.002G190200.1.v4.1 annot-version=v4.1 MALVIYWYDIVCFGIVAASFVVSLWVLWRRDLASKCDDNFLYQSLLVARPDNNDRTVLAMPRNHVGSSQLWTSCWKGVHPGWLLATRFISFLVMAGLLWR DIVDWDATIFVYYTEWTFMLIMIYFALGTVISAYGCWVSLKQPAVSEHGENSVFLKRDVEEDGTATSITYKEKKSGGTIKLRSHCAEEAIRERAGFWGYL MQIIYQTCAGAVILTDIIFWCIIVPFLSNTHLGLNALMGCMHSLNAVFLLLDTALNSLPFPWFRLAYFVQWSCLYVIFQWVIHACGFTWWPYPFLELNTP WAPLWYFAMAVIHIPCYGIYALIFKAKNTIFPRLFPRAFVRSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47115			unknown protein		Potri.002G190200 [exp]	0	1
AT2G17710			unknown protein		Potri.005G107800 [exp]	2.00	0.9160
AT1G11090			alpha/beta-Hydrolases superfam...		Potri.011G046500 [exp]	3.16	0.8804
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	4.69	0.8409
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G069733 [exp]	5.47	0.8735
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	6.70	0.8777
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	7.21	0.8562	PtrANT3
					Potri.001G181701 [exp]	7.41	0.8755
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	8.77	0.8733	Pt-EU3.1
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	8.94	0.8663
					Potri.005G045300 [exp]	10.90	0.8496

Compare expression of checked genes

Potri.002G190200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.