Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02475 241 / 6e-81 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G01883 227 / 3e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1) AT1G02470 192 / 9e-62 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115400 [exp] 352 / 2e-124 AT1G02475 217 / 1e-71 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009002 [exp] 246 / 6e-83 AT1G02475 253 / 5e-86 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10009629 [exp] 230 / 5e-76 AT1G02475 237 / 4e-79 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF03364 [poplar] [flax] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.002G190300.1 pacid=42779833 polypeptide=Potri.002G190300.1.p locus=Potri.002G190300 ID=Potri.002G190300.1.v4.1 annot-version=v4.1 ATGACCATGTCTGCTGCTGCCGCAACGGCCATTACACATTTTTCAACCCCAACTTCTCTCGGCCACAGCCAATTCTCAACCACTAAAAACAAGAGCGCGG CAATCTTATCAAACTCCATACCCACTTGCAAAATCACATCACCATCATCATCTATCAGTAAAGTCCAATATGGATATGGTTACTCGAAGAGAAACTCGGT TCTTACTGGGTTCAAGCCCTTTTCTTCTCCAGTCATGGAGTGGCAAGATTGCAAGGTTAAGATGGAGATTGACGTGCCTGTTGGGGTGGCTTATAATCTT TATTCAGATCGTGAATCAATTCCTCGTTGGATGCCCTTCATTTCATCTGTGCAGGTACTCAAAGACAAACCCGACCTATCACGGTGGTCACTGAAGTATG AAGCACTTGGTCAGAATATTGAATACTCTTGGCTTGCTAGAAATATGCAGCCAACTCCGAATCAGAAAATTCATTGGAGATCTCTGGAAGGTCTTCCTAA CAGAGGCATCGTTCGATTTTTTCCTAAAGGTCCTTCATCATGTCTAGTAGAACTAACGGTTTCATATGAAGTTCCCGAGCTTTTGGTTCCTGTGGCAACG GCACTGCAACCTTTGCTTGAGAGCTTACTCAGAGGGGGTTTGGAAAGGTTTGCGAAACTTGCAAAAAACACTTTGGCTGACTGA
AA sequence Show only first row Show all	>Potri.002G190300.1 pacid=42779833 polypeptide=Potri.002G190300.1.p locus=Potri.002G190300 ID=Potri.002G190300.1.v4.1 annot-version=v4.1 MTMSAAAATAITHFSTPTSLGHSQFSTTKNKSAAILSNSIPTCKITSPSSSISKVQYGYGYSKRNSVLTGFKPFSSPVMEWQDCKVKMEIDVPVGVAYNL YSDRESIPRWMPFISSVQVLKDKPDLSRWSLKYEALGQNIEYSWLARNMQPTPNQKIHWRSLEGLPNRGIVRFFPKGPSSCLVELTVSYEVPELLVPVAT ALQPLLESLLRGGLERFAKLAKNTLAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02475			Polyketide cyclase/dehydrase a...		Potri.002G190300 [exp]	0	1
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	7.28	0.9382
AT1G53800			unknown protein		Potri.003G073400 [exp]	11.87	0.9344
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	15.23	0.9351	Pt-PSAL.3
AT5G50090			unknown protein		Potri.012G077300 [exp]	16.24	0.8959
AT4G28706			pfkB-like carbohydrate kinase ...		Potri.002G254500 [exp]	23.62	0.9179
AT2G05310			unknown protein		Potri.014G167300 [exp]	26.22	0.9239
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	29.25	0.9285
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	31.30	0.9254
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.002G069000 [exp]	43.98	0.9186
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G085900 [exp]	48.27	0.9220

Compare expression of checked genes

Potri.002G190300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.